RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KCNK7Q9Y2U2 307 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 V9GY05 133 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 METTL21EPA6NDL7 271 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 C11orf94C9JXX5 98 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 TGOLN2O43493 480 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 REG1AP05451 166 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 HIST1H1DP16402 221 aaKnown RBP12.47□□□□□ -0.41
VPS29-204ENST00000548259 FCGR2BP31994 310 aaPredicted RBP12.47□□□□□ -0.41
VPS29-204ENST00000548259 PRR20EP86478 221 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 PRR20CP86479 221 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 PRR20DP86480 221 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 PRR20BP86481 221 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 PRR20AP86496 221 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 LIPKQ5VXJ0 399 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 OR11H2Q8NH07 326 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 ZNF502Q8TBZ5 544 aa12.47□□□□□ -0.41
VPS29-204ENST00000548259 SRSF8Q9BRL6 282 aaKnown RBP12.47□□□□□ -0.41
VPS29-204ENST00000548259 TMEM272A0A1B0GTI8 110 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 IGLL5B9A064 214 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 E7EUB6 86 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 MFNGO00587 321 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 HLA-DQB1P01920 261 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 DTYMKP23919 212 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 CALRP27797 417 aaKnown RBP12.46□□□□□ -0.41
VPS29-204ENST00000548259 SPSB3Q6PJ21 355 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 SSX9Q7RTT3 188 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 NR2C2APQ86WQ0 139 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 VN1R17PQ8TDU5 208 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 BSCL2Q96G97 398 aaPredicted RBP12.46□□□□□ -0.41
VPS29-204ENST00000548259 GFI1Q99684 422 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 C20orf24Q9BUV8 137 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 HRASLSQ9HDD0 168 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 SPATA2Q9UM82 520 aa12.46□□□□□ -0.41
VPS29-204ENST00000548259 NDUFA4O00483 81 aa12.45□□□□□ -0.42
VPS29-204ENST00000548259 XRCC3O43542 346 aa12.45□□□□□ -0.42
VPS29-204ENST00000548259 RPL30P62888 115 aaKnown RBP12.45□□□□□ -0.42
VPS29-204ENST00000548259 IRF3Q14653 427 aa12.45□□□□□ -0.42
VPS29-204ENST00000548259 ZNF66Q6ZN08 573 aa12.45□□□□□ -0.42
VPS29-204ENST00000548259 COMMD5Q9GZQ3 224 aa12.45□□□□□ -0.42
VPS29-204ENST00000548259 FKBP14Q9NWM8 211 aa12.45□□□□□ -0.42
VPS29-204ENST00000548259 RYR1P21817 5038 aa12.45□□□□□ -0.42
VPS29-204ENST00000548259 KIAA1109Q2LD37 5005 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 A0A1B0GW64 132 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 PTGES3LE9PB15 166 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 RAB27BO00194 218 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 PDCD5O14737 125 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 MRPS14O60783 128 aaKnown RBP12.44□□□□□ -0.42
VPS29-204ENST00000548259 RPA2P15927 270 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 RAB6AP20340 208 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 NFYAP23511 347 aaPredicted RBP12.44□□□□□ -0.42
VPS29-204ENST00000548259 HES5Q5TA89 166 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 GVQW1Q8N7I0 195 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 CMTM3Q96MX0 182 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 ATP6V0BQ99437 205 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 SCN3BQ9NY72 215 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 BET1LQ9NYM9 111 aa12.44□□□□□ -0.42
VPS29-204ENST00000548259 OR2T8A6NH00 312 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 K7EMT4 169 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 CTSDP07339 412 aaPredicted RBP12.43□□□□□ -0.42
VPS29-204ENST00000548259 HSMCR30P0CW71 290 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 MFAP2P55001 183 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 THOC7Q6I9Y2 204 aaKnown RBP12.43□□□□□ -0.42
VPS29-204ENST00000548259 TMEM91Q6ZNR0 172 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 HSD17B13Q7Z5P4 300 aaPredicted RBP12.43□□□□□ -0.42
VPS29-204ENST00000548259 APRG1Q8IVJ8 170 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 MFSD4AQ8N468 514 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 TAS2R8Q9NYW2 309 aa12.43□□□□□ -0.42
VPS29-204ENST00000548259 S1PR2O95136 353 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 GNAO1P09471 354 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 OR2B8PP59922 312 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 PAFAH1B2P68402 229 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 TMEM187Q14656 261 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 LAIR2Q6ISS4 152 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 CCDC90BQ9GZT6 254 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 DCSTAMPQ9H295 470 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 ACOT13Q9NPJ3 140 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 APLNQ9ULZ1 77 aa12.42□□□□□ -0.42
VPS29-204ENST00000548259 LSM2Q9Y333 95 aaKnown RBP12.42□□□□□ -0.42
VPS29-204ENST00000548259 C15orf62A8K5M9 175 aa12.41□□□□□ -0.42
VPS29-204ENST00000548259 CA1P00915 261 aaPredicted RBP12.41□□□□□ -0.42
VPS29-204ENST00000548259 TIMM50Q3ZCQ8 353 aa12.41□□□□□ -0.42
VPS29-204ENST00000548259 SLC25A24Q6NUK1 477 aa12.41□□□□□ -0.42
VPS29-204ENST00000548259 CNIH2Q6PI25 160 aa12.41□□□□□ -0.42
VPS29-204ENST00000548259 QTRT1Q9BXR0 403 aaKnown RBP12.41□□□□□ -0.42
VPS29-204ENST00000548259 HRH4Q9H3N8 390 aa12.41□□□□□ -0.42
VPS29-204ENST00000548259 IGKV1D-8A0A087WSZ0 117 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 IGLC7A0M8Q6 106 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 IGLV2-14P01704 120 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 FGF2P09038 288 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 TAS2R31P59538 309 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 RPS25P62851 125 aaKnown RBP12.4□□□□□ -0.42
VPS29-204ENST00000548259 PLA2G7Q13093 441 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 GDPD1Q8N9F7 314 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 ATG5Q9H1Y0 275 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 C21orf62Q9NYP8 219 aa12.4□□□□□ -0.42
VPS29-204ENST00000548259 IGKV1D-13A0A0B4J2D9 117 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 RBFOX2O43251 390 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS29-204ENST00000548259 CD5P06127 495 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 IGKV1-13P0DP09 117 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 NQO2P16083 231 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms