RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 GPR183P32249 361 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 TEX45Q8NA69 505 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 LYZL4Q96KX0 146 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 FAM103A1Q9BTL3 118 aaKnown RBP11.89□□□□□ -0.51
COLCA1-204ENST00000540738 FBLN5Q9UBX5 448 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 PGPA6NDG6 321 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 RPS20P60866 119 aaKnown RBP11.89□□□□□ -0.51
COLCA1-204ENST00000540738 TMEM18Q96B42 140 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 BPESC1Q9GZL8 116 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 MSGN1A6NI15 193 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 RNF223E7ERA6 249 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 SPINK4O60575 86 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 ZNF250P15622 560 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 MEOX2P50222 304 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 CMC4P56277 68 aaPredicted RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 TMEM187Q14656 261 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 MIC13Q5XKP0 118 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 RNASEH2CQ8TDP1 164 aaKnown RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 IFI27L2Q9H2X8 130 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 C5orf66Q9H5L9 145 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 SAA2-SAA4A0A096LPE2 208 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 E7EQL1 145 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 TIMM23O14925 209 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 IGKV3-15P01624 115 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 SAA2P0DJI9 122 aaPredicted RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 HEPN1Q6WQI6 88 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 KIAA1671Q9BY89 1806 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 IGHV3-35A0A0C4DH35 117 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 CA2P00918 260 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 NHLH2Q02577 135 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 MORN2Q502X0 79 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 C12orf54Q6X4T0 127 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 EIF4E3Q8N5X7 224 aaKnown RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 OR2D3Q8NGH3 330 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 RPUSD1Q9UJJ7 312 aaKnown RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 WISP1O95388 367 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 CLEC19AQ6UXS0 136 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 FAM210BQ96KR6 192 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 SH3BGRL3Q9H299 93 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 OR51M1Q9H341 326 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 IL36RNQ9UBH0 155 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 RNF114Q9Y508 228 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 TRBV6-7A0A0A0MS04 114 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 C7orf66A4D0T2 115 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 F12P00748 615 aaPredicted RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 IGHV3-11P01762 117 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 NSUN5P1Q3KNT7 163 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 ITLN2Q8WWU7 325 aaPredicted RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 GGACTQ9BVM4 153 aa11.88□□□□□ -0.51
COLCA1-204ENST00000540738 TBL2Q9Y4P3 447 aaKnown RBP11.88□□□□□ -0.51
COLCA1-204ENST00000540738 PSMB11A5LHX3 300 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 GALNT14Q96FL9 552 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 GPHA2Q96T91 129 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 HSPB7Q9UBY9 170 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 BDP1A6H8Y1 2624 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 TMSB15BA0A087X1C1 80 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 HIST1H1AQ02539 215 aaPredicted RBP11.87□□□□□ -0.51
COLCA1-204ENST00000540738 PAQR4Q8N4S7 273 aaPredicted RBP11.87□□□□□ -0.51
COLCA1-204ENST00000540738 TMEM116Q8NCL8 245 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 SRSF12Q8WXF0 261 aaKnown RBP11.87□□□□□ -0.51
COLCA1-204ENST00000540738 CACNG8Q8WXS5 425 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 SPSB4Q96A44 273 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 MDC1Q14676 2089 aaKnown RBP11.87□□□□□ -0.51
COLCA1-204ENST00000540738 CGB1A6NKQ9 187 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 RBFOX2O43251 390 aaKnown RBP eCLIP11.87□□□□□ -0.51
COLCA1-204ENST00000540738 MSMBP08118 114 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 RNASEKQ6P5S7 137 aaKnown RBP11.87□□□□□ -0.51
COLCA1-204ENST00000540738 TMPRSS5Q9H3S3 457 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 IGHV2-26A0A0B4J1V2 119 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 LILRA1O75019 489 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 GTSCR1Q86UQ5 136 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 C11orf42Q8N5U0 333 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 ZNF525Q8N782 197 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 OR10S1Q8NGN2 331 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 CLDND2Q8NHS1 167 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 TSC2P49815 1807 aa11.87□□□□□ -0.51
COLCA1-204ENST00000540738 A8MWL6 223 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 UBE2L6O14933 153 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 NPFFO15130 113 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 RPS11P62280 158 aaKnown RBP eCLIP11.86□□□□□ -0.51
COLCA1-204ENST00000540738 WNT10AQ9GZT5 417 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 C17orf98A8MV24 154 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 ISLRO14498 428 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 IGHV1-8P0DP01 117 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 ZNF362Q5T0B9 420 aaPredicted RBP11.86□□□□□ -0.51
COLCA1-204ENST00000540738 AMMECR1LQ6DCA0 310 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 Q96MF0 132 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 RNF5Q99942 180 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 FOXA2Q9Y261 457 aaPredicted RBP11.86□□□□□ -0.51
COLCA1-204ENST00000540738 B4DEV8 164 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 OR9G9P0C7N8 305 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 CXCL3P19876 107 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 UCP1P25874 307 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 CD69Q07108 199 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 CYP2G1PQ6ZSU1 146 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 ARL2-SNX15V9GYD0 113 aa11.86□□□□□ -0.51
COLCA1-204ENST00000540738 PHLDA3Q9Y5J5 127 aa11.85□□□□□ -0.51
COLCA1-204ENST00000540738 PCNX2A6NKB5 2137 aa11.85□□□□□ -0.51
COLCA1-204ENST00000540738 TRAV24A0A0B4J272 114 aa11.85□□□□□ -0.51
COLCA1-204ENST00000540738 SAA1P0DJI8 122 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms