RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 ZNF785A8K8V0 405 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 H3BTX0 84 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BKO60814 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 IL18BPO95998 194 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BJP06899 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BOP23527 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BBP33778 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BDP58876 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BCP62807 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST2H2BEQ16778 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 IBA57Q5T440 356 aaKnown RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 GFRALQ6UXV0 394 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 FAM89BQ8N5H3 189 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BHQ93079 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BNQ99877 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H2BMQ99879 126 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 QTRT1Q9BXR0 403 aaKnown RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 SEBOXQ9HB31 216 aaPredicted RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 TMEM140Q9NV12 185 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 PRNDQ9UKY0 176 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 IGKV1-27A0A075B6S5 117 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 SLC17A3O00476 420 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 KIR2DS2P43631 304 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 RPL31P62899 125 aaKnown RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 C10orf113Q5VZT2 155 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 TGIF2LYQ8IUE0 185 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 OR2V2Q96R30 315 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 GSX1Q9H4S2 264 aaPredicted RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 ONECUT1Q9UBC0 465 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 CUL9Q8IWT3 2517 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 RRHO14718 337 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 CD5P06127 495 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 HCP5Q6MZN7 132 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 BHLHA15Q7RTS1 189 aaPredicted RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 REC114Q7Z4M0 266 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 DOLPP1Q86YN1 238 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 TMEM183AQ8IXX5 376 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 CLDND2Q8NHS1 167 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 REPIN1Q9BWE0 567 aaKnown RBP8.41□□□□□ -1.06
TRAF1-202ENST00000540010 TMEM191AQ9H0A3 160 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 RNF7Q9UBF6 113 aa8.41□□□□□ -1.06
TRAF1-202ENST00000540010 SRIP30626 198 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 SRP14P37108 136 aaKnown RBP8.4□□□□□ -1.06
TRAF1-202ENST00000540010 COL5A1-AS1Q5SY13 56 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 ASCL5Q7RTU5 278 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 ZNRF1Q8ND25 227 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 VSTM2AQ8TAG5 236 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 KLF14Q8TD94 323 aaPredicted RBP8.4□□□□□ -1.06
TRAF1-202ENST00000540010 DCTN5Q9BTE1 182 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 ZNF581Q9P0T4 197 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 YTHDF2Q9Y5A9 579 aaKnown RBP8.4□□□□□ -1.06
TRAF1-202ENST00000540010 IGKV1-12A0A0C4DH73 117 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 MGST3O14880 152 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 IGKV1D-12P01611 117 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 IGHG3P01860 377 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 LINC00869P0C866 280 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 HIST1H1BP16401 226 aaKnown RBP8.4□□□□□ -1.06
TRAF1-202ENST00000540010 S100A4P26447 101 aaKnown RBP8.4□□□□□ -1.06
TRAF1-202ENST00000540010 ICAM4Q14773 271 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 FAM222BQ8WU58 562 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 DMRTA2Q96SC8 542 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 SAP30LQ9HAJ7 183 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 SPG11Q96JI7 2443 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 PGPEP1LA6NFU8 196 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 TMEM250H0YL14 139 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 RAB29O14966 203 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 SIAH2O43255 324 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 SS18L1O75177 396 aaPredicted RBP8.4□□□□□ -1.06
TRAF1-202ENST00000540010 PRSS1P07477 247 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 PAFAH1B2P68402 229 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 TFF3Q07654 80 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 VWA1Q6PCB0 445 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 SSX8Q7RTT4 187 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 LHFPL1Q86WI0 220 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 C9orf106Q8NAJ2 232 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 ST6GALNAC3Q8NDV1 305 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 OR1L8Q8NGR8 309 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 LSM10Q969L4 123 aaKnown RBP8.4□□□□□ -1.06
TRAF1-202ENST00000540010 TUBA4BQ9H853 241 aa8.4□□□□□ -1.06
TRAF1-202ENST00000540010 PRRC2CQ9Y520 2896 aaKnown RBP8.4□□□□□ -1.07
TRAF1-202ENST00000540010 TEX50A0A1B0GTY4 177 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 FBLL1A6NHQ2 334 aaKnown RBP8.4□□□□□ -1.07
TRAF1-202ENST00000540010 C17orf98A8MV24 154 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 SMPD2O60906 423 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 CRYABP02511 175 aaKnown RBP8.4□□□□□ -1.07
TRAF1-202ENST00000540010 IGHV1-2P23083 117 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 ATP5G3P48201 142 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 RPL24P83731 157 aaKnown RBP8.4□□□□□ -1.07
TRAF1-202ENST00000540010 MUC15Q8N387 334 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 SSC4DQ8WTU2 575 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 PAXXQ9BUH6 204 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 SDF2L1Q9HCN8 221 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 CLEC5AQ9NY25 188 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 KMT2EQ8IZD2 1858 aa8.4□□□□□ -1.07
TRAF1-202ENST00000540010 C5orf52A6NGY3 159 aa8.39□□□□□ -1.07
TRAF1-202ENST00000540010 TMEM210A6NLX4 147 aa8.39□□□□□ -1.07
TRAF1-202ENST00000540010 C12orf77C9JDV5 145 aa8.39□□□□□ -1.07
TRAF1-202ENST00000540010 C9JQL5 133 aa8.39□□□□□ -1.07
TRAF1-202ENST00000540010 K7N7A8 449 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms