RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SLIT2O94813 1529 aa1.38□□□□□ -2.19
CD44-234ENST00000531873 MDC1Q14676 2089 aaKnown RBP1.38□□□□□ -2.19
CD44-234ENST00000531873 ZCCHC6Q5VYS8 1495 aaKnown RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 COL6A3P12111 3177 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 CICQ96RK0 1608 aaPredicted RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 MAST2Q6P0Q8 1798 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 LAMA2P24043 3122 aaKnown RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 TET3O43151 1660 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 GRIFINA4D1Z8 144 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 OR4C45A6NMZ5 311 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 EEF1E1-BLOC1S5C9J1V9 151 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 H3BPC8 53 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 KPNA3O00505 521 aaPredicted RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 UBE2L6O14933 153 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 ZNF189O75820 626 aaPredicted RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 NDUFB2O95178 105 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 TNNC2P02585 160 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 CTXN2P0C2S0 81 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 OR5G3P0C626 314 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 FGF6P10767 208 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 UCHL3P15374 230 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 HOXA6P31267 233 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 FKBP1AP62942 108 aaKnown RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 BTN3A2P78410 334 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 IFITM2Q01629 132 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 MEF2BQ02080 365 aaPredicted RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 AESQ08117 197 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 FADDQ13158 208 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 FAM201AQ5SY85 155 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 CCDC121Q6ZUS5 278 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 TCF24Q7RTU0 167 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 CLDND2Q8NHS1 167 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 LHFPL5Q8TAF8 219 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 SMCR5Q8TEV8 140 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 ANKRD7Q92527 254 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 C12orf43Q96C57 262 aaKnown RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 PPP1R14BQ96C90 147 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 PRAP1Q96NZ9 151 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 TTTY13Q9BZ97 58 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 OR51V1Q9H2C8 321 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 FKBP14Q9NWM8 211 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 TAAR3PQ9P1P4 343 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 PSORS1C2Q9UIG4 136 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 MMACHCQ9Y4U1 282 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 LSM5Q9Y4Y9 91 aaKnown RBP1.37□□□□□ -2.19
CD44-234ENST00000531873 SYNMO15061 1565 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 ADGRB2O60241 1585 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 DNMBPQ6XZF7 1577 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 CCDC88AQ3V6T2 1871 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 SHROOM2Q13796 1616 aa1.37□□□□□ -2.19
CD44-234ENST00000531873 ZDBF2Q9HCK1 2354 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 TULP4Q9NRJ4 1543 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 XIRP1Q702N8 1843 aaKnown RBP1.36□□□□□ -2.19
CD44-234ENST00000531873 MYH11P35749 1972 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 C11orf86A6NJI1 115 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 PLA2G10O15496 165 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 RPP14O95059 124 aaKnown RBP1.36□□□□□ -2.19
CD44-234ENST00000531873 FAM228BP0C875 321 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 ZNF728P0DKX0 622 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 ALOX5APP20292 161 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 HAAOP46952 286 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 GABRA2P47869 451 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 XCL1P47992 114 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 SULT1A1P50225 295 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 PLXNA3P51805 1871 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 CEBPGP53567 150 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 TAS2R30P59541 319 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 SPCS3P61009 180 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 WRNQ14191 1432 aaPredicted RBP eCLIP1.36□□□□□ -2.19
CD44-234ENST00000531873 HIST2H3PS2Q5TEC6 136 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 C5orf46Q6UWT4 87 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 TMPPEQ6ZT21 453 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 C10orf71Q711Q0 1435 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 TRAPPC5Q8IUR0 188 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 SLC22A24Q8N4F4 322 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 OR4C16Q8NGL9 310 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 KLK6Q92876 244 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 NMNAT3Q96T66 252 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 TEP1Q99973 2627 aaKnown RBP1.36□□□□□ -2.19
CD44-234ENST00000531873 SCAPERQ9BY12 1400 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 PECRQ9BY49 303 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 TMEM222Q9H0R3 208 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 GPR84Q9NQS5 396 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.36□□□□□ -2.19
CD44-234ENST00000531873 VPS29Q9UBQ0 182 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 CEP170BQ9Y4F5 1589 aaPredicted RBP1.36□□□□□ -2.19
CD44-234ENST00000531873 FAM215AQ9Y5M1 114 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 UNC80Q8N2C7 3258 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 FN1P02751 2386 aaKnown RBP1.36□□□□□ -2.19
CD44-234ENST00000531873 RTTNQ86VV8 2226 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 ZCCHC11Q5TAX3 1644 aaKnown RBP1.36□□□□□ -2.19
CD44-234ENST00000531873 BIVM-ERCC5R4GMW8 1640 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 PXDNLA1KZ92 1463 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 MUC6Q6W4X9 2439 aa1.36□□□□□ -2.19
CD44-234ENST00000531873 ABCC3O15438 1527 aa1.35□□□□□ -2.19
CD44-234ENST00000531873 EFCAB6Q5THR3 1501 aa1.35□□□□□ -2.19
CD44-234ENST00000531873 ITPR3Q14573 2671 aa1.35□□□□□ -2.19
CD44-234ENST00000531873 CPAMD8Q8IZJ3 1885 aa1.35□□□□□ -2.19
CD44-234ENST00000531873 FRMPD1Q5SYB0 1578 aa1.35□□□□□ -2.19
CD44-234ENST00000531873 MYO18BQ8IUG5 2567 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms