RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 NDUFB11Q9NX14 153 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 TP53TG1Q9Y2A0 90 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 SMIM30A4D0T7 59 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 TMEM235A6NFC5 223 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 SSX5O60225 188 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 DEFA4P12838 97 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 HLA-GP17693 338 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 GALP22466 123 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 CEMP1Q6PRD7 247 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-202ENST00000527827 RBPMS2Q6ZRY4 209 aaKnown RBP17.52■□□□□ 0.4
CPSF1-202ENST00000527827 BET1LQ9NYM9 111 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 MRPL27Q9P0M9 148 aaKnown RBP17.52■□□□□ 0.4
CPSF1-202ENST00000527827 ANXA10Q9UJ72 324 aa17.52■□□□□ 0.4
CPSF1-202ENST00000527827 SPRY2O43597 315 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 GPR183P32249 361 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 OR2B8PP59922 312 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 TIMM50Q3ZCQ8 353 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 C22orf42Q6IC83 251 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 Q6ZWC4 215 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 OR2C3Q8N628 320 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 ZNF502Q8TBZ5 544 aa17.51■□□□□ 0.39
CPSF1-202ENST00000527827 IGHV3-35A0A0C4DH35 117 aa17.5■□□□□ 0.39
CPSF1-202ENST00000527827 ELLP55199 621 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-202ENST00000527827 OR4A5Q8NH83 315 aa17.5■□□□□ 0.39
CPSF1-202ENST00000527827 UBQLN2Q9UHD9 624 aa17.5■□□□□ 0.39
CPSF1-202ENST00000527827 IGLC7A0M8Q6 106 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 TNFSF12O43508 249 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 BMI1P35226 326 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 APOC4P55056 127 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 DEFB135Q30KP9 77 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 ZNF436Q9C0F3 470 aaPredicted RBP17.49■□□□□ 0.39
CPSF1-202ENST00000527827 C5orf66Q9H5L9 145 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 CCL28Q9NRJ3 127 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 UFC1Q9Y3C8 167 aa17.49■□□□□ 0.39
CPSF1-202ENST00000527827 TRAV3A0A0B4J244 114 aa17.48■□□□□ 0.39
CPSF1-202ENST00000527827 GNG2P59768 71 aa17.48■□□□□ 0.39
CPSF1-202ENST00000527827 PLET1Q6UQ28 207 aa17.48■□□□□ 0.39
CPSF1-202ENST00000527827 SLC38A6Q8IZM9 456 aa17.48■□□□□ 0.39
CPSF1-202ENST00000527827 SPAG8Q99932 426 aaPredicted RBP17.48■□□□□ 0.39
CPSF1-202ENST00000527827 HRASLSQ9HDD0 168 aa17.48■□□□□ 0.39
CPSF1-202ENST00000527827 PTBP1P26599 531 aaKnown RBP eCLIP17.47■□□□□ 0.395e-6■■■□□ 16.4
CPSF1-202ENST00000527827 SPAG16Q8N0X2 631 aa17.47■□□□□ 0.39
CPSF1-202ENST00000527827 SECTM1Q8WVN6 248 aa17.47■□□□□ 0.39
CPSF1-202ENST00000527827 NOTOA8MTQ0 251 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 ANKRD65E5RJM6 399 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 UBE2CO00762 179 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 TSPAN4O14817 238 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 ATF4P18848 351 aaPredicted RBP17.46■□□□□ 0.39
CPSF1-202ENST00000527827 MSMO1Q15800 293 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 ODF3L2Q3SX64 289 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 ZNF773Q6PK81 442 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 RPP25LQ8N5L8 163 aaKnown RBP17.46■□□□□ 0.39
CPSF1-202ENST00000527827 TMEM190Q8WZ59 177 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 RNF183Q96D59 192 aa17.46■□□□□ 0.39
CPSF1-202ENST00000527827 UPK2O00526 184 aa17.45■□□□□ 0.38
CPSF1-202ENST00000527827 RBFOX2O43251 390 aaKnown RBP eCLIP17.45■□□□□ 0.384e-15■□□□□ 9.7
CPSF1-202ENST00000527827 TGOLN2O43493 480 aa17.45■□□□□ 0.38
CPSF1-202ENST00000527827 PTHLHP12272 177 aa17.45■□□□□ 0.38
CPSF1-202ENST00000527827 FCGR2CP31995 323 aa17.45■□□□□ 0.38
CPSF1-202ENST00000527827 POU2AF1Q16633 256 aa17.45■□□□□ 0.38
CPSF1-202ENST00000527827 OR13F1Q8NGS4 319 aa17.45■□□□□ 0.38
CPSF1-202ENST00000527827 AIFM2Q9BRQ8 373 aa17.45■□□□□ 0.38
CPSF1-202ENST00000527827 KLK5Q9Y337 293 aaPredicted RBP17.45■□□□□ 0.38
CPSF1-202ENST00000527827 KIR2DL5BA0A0G2JN68 375 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 KIR2DL5BA0A0G2JPC4 375 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 SULT1C2O00338 296 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 SCGNO76038 276 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 S1PR2O95136 353 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 TAS2R31P59538 309 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 KIR2DL5AQ8N109 375 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 OR10W1Q8NGF6 305 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 KIR2DL5BQ8NHK3 375 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 SRSF8Q9BRL6 282 aaKnown RBP17.44■□□□□ 0.38
CPSF1-202ENST00000527827 THYN1Q9P016 225 aa17.44■□□□□ 0.38
CPSF1-202ENST00000527827 RPA2P15927 270 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 GVQW1Q8N7I0 195 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 STPG3Q8N7X2 389 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 ZBTB34Q8NCN2 500 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 BEST4Q8NFU0 473 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 LGALS14Q8TCE9 139 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 VN1R17PQ8TDU5 208 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 COMMD5Q9GZQ3 224 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 TXNL4BQ9NX01 149 aaKnown RBP17.43■□□□□ 0.38
CPSF1-202ENST00000527827 DAPK2Q9UIK4 370 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 HERC2O95714 4834 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 DNAH10Q8IVF4 4471 aa17.43■□□□□ 0.38
CPSF1-202ENST00000527827 HPRT1P00492 218 aa17.42■□□□□ 0.38
CPSF1-202ENST00000527827 PPYP01298 95 aa17.42■□□□□ 0.38
CPSF1-202ENST00000527827 NQO2P16083 231 aa17.42■□□□□ 0.38
CPSF1-202ENST00000527827 ARPC4P59998 168 aa17.42■□□□□ 0.38
CPSF1-202ENST00000527827 DAZ1Q9NQZ3 744 aaKnown RBP17.42■□□□□ 0.38
CPSF1-202ENST00000527827 OR2T8A6NH00 312 aa17.41■□□□□ 0.38
CPSF1-202ENST00000527827 RPL35AP18077 110 aaKnown RBP17.41■□□□□ 0.38
CPSF1-202ENST00000527827 FGF9P31371 208 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-202ENST00000527827 GDPD1Q8N9F7 314 aa17.41■□□□□ 0.38
CPSF1-202ENST00000527827 CNBD2Q96M20 576 aa17.41■□□□□ 0.38
CPSF1-202ENST00000527827 QTRT1Q9BXR0 403 aaKnown RBP17.41■□□□□ 0.38
CPSF1-202ENST00000527827 SLC5A7Q9GZV3 580 aa17.41■□□□□ 0.38
CPSF1-202ENST00000527827 TMEM140Q9NV12 185 aa17.41■□□□□ 0.38
CPSF1-202ENST00000527827 RHBDL2Q9NX52 303 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms