RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PRNDQ9UKY0 176 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 FNDC10F2Z333 226 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 NDUFB4O95168 129 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 TYMSP04818 313 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 FABP4P15090 132 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 TMEM183AQ8IXX5 376 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 NUP37Q8NFH4 326 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 FAM57AQ8TBR7 257 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 ELOVL1Q9BW60 279 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 A0A1W2PPQ1 181 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 LCN2P80188 198 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 FAM27E3Q08E93 113 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 ARSJQ5FYB0 599 aaPredicted RBP17.44■□□□□ 0.38
VPS28-205ENST00000526204 TCF23Q7RTU1 214 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 RBMXL3Q8N7X1 1067 aaKnown RBP17.44■□□□□ 0.38
VPS28-205ENST00000526204 DEFB108BQ8NET1 73 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 PFDN5Q99471 154 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 CCL13Q99616 98 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 ZNF257Q9Y2Q1 563 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 IL6RP08887 468 aaPredicted RBP17.44■□□□□ 0.38
VPS28-205ENST00000526204 RPL29P47914 159 aaKnown RBP17.44■□□□□ 0.38
VPS28-205ENST00000526204 TEX36Q5VZQ5 186 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 DUX4L9Q6RFH8 374 aaPredicted RBP17.44■□□□□ 0.38
VPS28-205ENST00000526204 CISD2Q8N5K1 135 aaKnown RBP17.44■□□□□ 0.38
VPS28-205ENST00000526204 IMMP2LQ96T52 175 aa17.44■□□□□ 0.38
VPS28-205ENST00000526204 RHOBP62745 196 aa17.43■□□□□ 0.38
VPS28-205ENST00000526204 COA6Q5JTJ3 125 aaKnown RBP17.43■□□□□ 0.38
VPS28-205ENST00000526204 SLC25A48Q6ZT89 311 aaKnown RBP17.43■□□□□ 0.38
VPS28-205ENST00000526204 C1orf159Q96HA4 380 aa17.43■□□□□ 0.38
VPS28-205ENST00000526204 ACY3Q96HD9 319 aa17.43■□□□□ 0.38
VPS28-205ENST00000526204 TMEM204Q9BSN7 226 aa17.43■□□□□ 0.38
VPS28-205ENST00000526204 RPUSD1Q9UJJ7 312 aaKnown RBP17.43■□□□□ 0.38
VPS28-205ENST00000526204 OR51B2Q9Y5P1 312 aa17.43■□□□□ 0.38
VPS28-205ENST00000526204 CA2P00918 260 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 RTL8BQ17RB0 113 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 SSMEM1Q8WWF3 244 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 ZCCHC14Q8WYQ9 949 aaKnown RBP17.42■□□□□ 0.38
VPS28-205ENST00000526204 PACRGQ96M98 296 aaPredicted RBP17.42■□□□□ 0.38
VPS28-205ENST00000526204 HIST1H2BLQ99880 126 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 hADV38S2A0JD32 116 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 MT-CO2P00403 227 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 HIST1H1BP16401 226 aaKnown RBP17.42■□□□□ 0.38
VPS28-205ENST00000526204 EFNB3Q15768 340 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 TMEM108Q6UXF1 575 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 STPG3Q8N7X2 389 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 OR5T1Q8NG75 326 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 CHODLQ9H9P2 273 aa17.42■□□□□ 0.38
VPS28-205ENST00000526204 TRAV20A0A0B4J274 112 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 BMP5P22003 454 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 GNG10P50151 68 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 ATP5IP56385 69 aaPredicted RBP17.41■□□□□ 0.38
VPS28-205ENST00000526204 FAM216BQ8N7L0 139 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 OR1P1Q8NH06 330 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 HCFC1P51610 2035 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 TNFRSF1AP19438 455 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 CHRNA7P36544 502 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 TCF15Q12870 199 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 ACTL10Q5JWF8 245 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 PLEKHA3Q9HB20 300 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 LINC00312Q9Y6C7 94 aa17.41■□□□□ 0.38
VPS28-205ENST00000526204 ZNF292O60281 2723 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 J3QR06 171 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 GCHFRP30047 84 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 C22orf34Q6ZV56 151 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 NEUROG1Q92886 237 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 DERL1Q9BUN8 251 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 FKBP11Q9NYL4 201 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 TP53TG5Q9Y2B4 290 aa17.4■□□□□ 0.38
VPS28-205ENST00000526204 DSPP15924 2871 aaKnown RBP17.39■□□□□ 0.38
VPS28-205ENST00000526204 NKX6-3A6NJ46 265 aa17.39■□□□□ 0.38
VPS28-205ENST00000526204 UPK2O00526 184 aa17.39■□□□□ 0.38
VPS28-205ENST00000526204 CT45A6P0DMU7 189 aa17.39■□□□□ 0.38
VPS28-205ENST00000526204 CT45A5P0DMU8 189 aa17.39■□□□□ 0.38
VPS28-205ENST00000526204 CT45A7P0DMV0 189 aa17.39■□□□□ 0.38
VPS28-205ENST00000526204 PRCDQ00LT1 54 aa17.39■□□□□ 0.38
VPS28-205ENST00000526204 SLC35D1Q9NTN3 355 aa17.39■□□□□ 0.38
VPS28-205ENST00000526204 ZFHX4Q86UP3 3567 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 CNOT1A5YKK6 2376 aaKnown RBP17.39■□□□□ 0.37
VPS28-205ENST00000526204 XKRY2A2RUG3 117 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 PRR20EP86478 221 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 PRR20CP86479 221 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 PRR20DP86480 221 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 PRR20BP86481 221 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 PRR20AP86496 221 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 FOXL1Q12952 345 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 CLEC12BQ2HXU8 276 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 SFRP2Q96HF1 295 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 HINT2Q9BX68 163 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 GAL3ST2Q9H3Q3 398 aa17.39■□□□□ 0.37
VPS28-205ENST00000526204 MMP23AO75900 390 aa17.38■□□□□ 0.37
VPS28-205ENST00000526204 MEF2CQ06413 473 aaPredicted RBP17.38■□□□□ 0.37
VPS28-205ENST00000526204 RNASEH2CQ8TDP1 164 aaKnown RBP17.38■□□□□ 0.37
VPS28-205ENST00000526204 SEPSECSQ9HD40 501 aaKnown RBP17.38■□□□□ 0.37
VPS28-205ENST00000526204 K7EM74 188 aa17.38■□□□□ 0.37
VPS28-205ENST00000526204 PDLIM4P50479 330 aa17.38■□□□□ 0.37
VPS28-205ENST00000526204 FAM78BQ5VT40 261 aa17.38■□□□□ 0.37
VPS28-205ENST00000526204 ELOVL5Q9NYP7 299 aa17.38■□□□□ 0.37
VPS28-205ENST00000526204 CFAP47Q6ZTR5 3102 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 C16orf97H3BN30 126 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 NDUFB7P17568 137 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms