RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CSN3P07498 182 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 MAS1LP35410 378 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 IBA57Q5T440 356 aaKnown RBP11.11□□□□□ -0.63
TCOF1-213ENST00000514442 C1orf174Q8IYL3 243 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 KLHDC3Q9BQ90 382 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 PRNDQ9UKY0 176 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 NTN3O00634 580 aaPredicted RBP11.11□□□□□ -0.63
TCOF1-213ENST00000514442 LEPROTL1O95214 131 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 SPSB3Q6PJ21 355 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 TMUB1Q9BVT8 246 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 SFXN3Q9BWM7 321 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 LINC00470Q9BZP3 86 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 ICE1Q9Y2F5 2266 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 J3QR06 171 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 OR1L4Q8NGR5 311 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 THYN1Q9P016 225 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 TMEM56-RWDD3S4R434 201 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 GOSR1O95249 250 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 NPY1RP25929 384 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 COMPP49747 757 aaPredicted RBP11.11□□□□□ -0.63
TCOF1-213ENST00000514442 ZNF525Q8N782 197 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 LYPD6BQ8NI32 183 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 TMEM70Q9BUB7 260 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 COL25A1Q9BXS0 654 aaPredicted RBP11.11□□□□□ -0.63
TCOF1-213ENST00000514442 OR51B2Q9Y5P1 312 aa11.11□□□□□ -0.63
TCOF1-213ENST00000514442 PROB1E7EW31 1015 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 OTX1P32242 354 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A2PQ658T7 463 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 RASL11BQ9BPW5 248 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 AGMATQ9BSE5 352 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 RALYQ9UKM9 306 aaKnown RBP11.1□□□□□ -0.63
TCOF1-213ENST00000514442 SCNM1Q9BWG6 230 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 CLEC5AQ9NY25 188 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 RFNGQ9Y644 331 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 TRAV9-2A0A087WT02 112 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 ODAMA1E959 279 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 CELA3BP08861 270 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 TDGF1P13385 188 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 IZUMO4Q1ZYL8 232 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 ZNF324BQ6AW86 544 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-213ENST00000514442 PNKDQ8N490 385 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 OR5P3Q8WZ94 311 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 hCG_38984A0A1B0GV85 526 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 MPDU1O75352 247 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 SLC25A53Q5H9E4 307 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 ST6GALNAC6Q969X2 333 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 IL36RNQ9UBH0 155 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 PXMP4Q9Y6I8 212 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 COX11Q9Y6N1 276 aa11.1□□□□□ -0.63
TCOF1-213ENST00000514442 GNG7O60262 68 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 CECR9P0C854 216 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 ARL14EPLP0DKL9 152 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 LGALS7P47929 136 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 ECSCRQ19T08 205 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 ACSF3Q4G176 576 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-213ENST00000514442 C17orf82Q86X59 251 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-213ENST00000514442 KCNMB1Q16558 191 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM89BQ8N5H3 189 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 RAB37Q96AX2 223 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 HEATR5BQ9P2D3 2071 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A10PA6NDY2 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A18PA6NE21 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A16PA6NEW6 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A20PA6NIJ5 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A8PA6NJQ4 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A7PA6NKC0 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A22PA8MWA6 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A12PA8MX19 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A5PA8MXJ8 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A23PA8MXZ1 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 SLC17A3O00476 420 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A15PP0C7V4 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A13PP0C7W8 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A14PP0C7W9 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FAM90A24PP0C7X0 464 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 UCP1P25874 307 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 CLDN18P56856 261 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 CALYQ9NYX4 217 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 BMI1P35226 326 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 LHX2P50458 406 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 FXYD3Q14802 87 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 CALHM1Q8IU99 346 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 ZNF645Q8N7E2 425 aa11.09□□□□□ -0.63
TCOF1-213ENST00000514442 HLA-DRB1P01911 266 aa11.08□□□□□ -0.63
TCOF1-213ENST00000514442 PQLC2Q6ZP29 291 aa11.08□□□□□ -0.63
TCOF1-213ENST00000514442 FAM19A2Q8N3H0 131 aa11.08□□□□□ -0.63
TCOF1-213ENST00000514442 C9orf106Q8NAJ2 232 aa11.08□□□□□ -0.63
TCOF1-213ENST00000514442 OR1L8Q8NGR8 309 aa11.08□□□□□ -0.63
TCOF1-213ENST00000514442 RNF115Q9Y4L5 304 aa11.08□□□□□ -0.63
TCOF1-213ENST00000514442 RALGAPA1Q6GYQ0 2036 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 IGKV3-7A0A075B6H7 116 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 OR4C46A6NHA9 309 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 SSTR5P35346 364 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 CDKN1BP46527 198 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 FAM201AQ5SY85 155 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 VSIRQ9H7M9 311 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 NEURL1O76050 574 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 C1QTNF9P0C862 333 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 IGHV1-2P23083 117 aa11.08□□□□□ -0.64
TCOF1-213ENST00000514442 ZNRF1Q8ND25 227 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms