RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 USP9XQ93008 2570 aaPredicted RBP6.82□□□□□ -1.32
SF3A1-210ENST00000498259 FLNCQ14315 2725 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 IGHV1-69DA0A0B4J2H0 117 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 A0A1W2PPI3 338 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 MSGN1A6NI15 193 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 TEX46H3BTG2 121 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 CORTO00230 105 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 NBR2O15453 112 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 SLC25A17O43808 307 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 MPDU1O75352 247 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 CST7O76096 145 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 VENTXO95231 258 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 IGHV1-69P01742 117 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 IFNA4P05014 189 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 SEC11BP0C7V7 166 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 PAX9P55771 341 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 RAB2AP61019 212 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 NHLH2Q02577 135 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 CLLU1Q5K131 121 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 ETFRF1Q6IPR1 90 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 TMEM14EPQ6UXP3 125 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 TMEM217Q8N7C4 229 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 ZNF709Q8N972 641 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 SLC24A4Q8NFF2 622 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 OR1L6Q8NGR2 347 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 TBX15Q96SF7 602 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 HINT2Q9BX68 163 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 PARD6GQ9BYG4 376 aaPredicted RBP6.82□□□□□ -1.32
SF3A1-210ENST00000498259 C11orf1Q9H5F2 150 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 ZNRD1Q9P1U0 126 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 METTL1Q9UBP6 276 aaKnown RBP6.82□□□□□ -1.32
SF3A1-210ENST00000498259 FBXO7Q9Y3I1 522 aa6.82□□□□□ -1.32
SF3A1-210ENST00000498259 SPTAN1Q13813 2472 aaKnown RBP6.82□□□□□ -1.32
SF3A1-210ENST00000498259 TEX50A0A1B0GTY4 177 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 IGSF23A1L1A6 192 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 SRRM4A7MD48 611 aaKnown RBP6.81□□□□□ -1.32
SF3A1-210ENST00000498259 NUDT19A8MXV4 375 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 FNDC10F2Z333 226 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 C17orf112F2Z3M2 114 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 H3BP45 60 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 TRIM77I1YAP6 450 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 RRHO14718 337 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 KCNAB3O43448 404 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 CNIH1O95406 144 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 IGKV1D-33P01593 117 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 IGKV1-33P01594 117 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 MBP02144 154 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 FBP1P09467 338 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 METTL15P1P0C7V9 234 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 TMEM11P17152 192 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 NPY1RP25929 384 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 SAA4P35542 130 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 DYNLT3P51808 116 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 BLOC1S1P78537 153 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 SERF2P84101 59 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 SLC38A11Q08AI6 406 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 EBI3Q14213 229 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 PSG5Q15238 335 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 MMDQ15546 238 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 AANATQ16613 207 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 PRSS8Q16651 343 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 CYB5R2Q6BCY4 276 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 RPL7L1Q6DKI1 246 aaKnown RBP6.81□□□□□ -1.32
SF3A1-210ENST00000498259 HCP5Q6MZN7 132 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 ALKAL2Q6UX46 152 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 DPPA3Q6W0C5 159 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 ETV3LQ6ZN32 361 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 NPBQ8NG41 125 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 C22orf15Q8WYQ4 148 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 NRGNQ92686 78 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 SAT2Q96F10 170 aaPredicted RBP6.81□□□□□ -1.32
SF3A1-210ENST00000498259 GINS3Q9BRX5 216 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 TMEM147Q9BVK8 224 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 SMIM3Q9BZL3 60 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 NDUFA4L2Q9NRX3 87 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 UQCC1Q9NVA1 299 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 PFDN2Q9UHV9 154 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 PITPNC1Q9UKF7 332 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 SIGLEC9Q9Y336 463 aa6.81□□□□□ -1.32
SF3A1-210ENST00000498259 HRNRQ86YZ3 2850 aaPredicted RBP6.8□□□□□ -1.32
SF3A1-210ENST00000498259 IGHV3-72A0A0B4J1Y9 119 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 CENPVL3A0A0U1RRI6 287 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 RPS10-NUDT3A0A1W2PQS6 291 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 BTBD17A6NE02 478 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 NCBP2LA6PVI3 153 aaKnown RBP6.8□□□□□ -1.32
SF3A1-210ENST00000498259 M0QZK8 103 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 TMEM50AO95807 157 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 TGFAP01135 160 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 IGLV2-23P01705 113 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 VDAC2P45880 294 aaPredicted RBP6.8□□□□□ -1.32
SF3A1-210ENST00000498259 RPL27AP46776 148 aaKnown RBP6.8□□□□□ -1.32
SF3A1-210ENST00000498259 KLRD1Q13241 179 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 SCGB2A2Q13296 93 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 DIAPH2-AS1Q14236 149 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 CLINT1Q14677 625 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 C2orf83Q53S99 150 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 OR8G2PQ6IF36 304 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 NANPQ8TBE9 248 aa6.8□□□□□ -1.32
SF3A1-210ENST00000498259 RNASEH2CQ8TDP1 164 aaKnown RBP6.8□□□□□ -1.32
SF3A1-210ENST00000498259 CACNG8Q8WXS5 425 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 261.1 ms