RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CLEC2DQ9UHP7 191 aa2.91□□□□□ -1.94
USP54-217ENST00000498213 GNG8Q9UK08 70 aa2.91□□□□□ -1.94
USP54-217ENST00000498213 TRAPPC2LQ9UL33 140 aa2.91□□□□□ -1.94
USP54-217ENST00000498213 EXOGQ9Y2C4 368 aaKnown RBP2.91□□□□□ -1.94
USP54-217ENST00000498213 LSM2Q9Y333 95 aaKnown RBP2.91□□□□□ -1.94
USP54-217ENST00000498213 KLK5Q9Y337 293 aaPredicted RBP2.91□□□□□ -1.94
USP54-217ENST00000498213 RPL36Q9Y3U8 105 aaKnown RBP2.91□□□□□ -1.94
USP54-217ENST00000498213 MUC2Q02817 5179 aa2.91□□□□□ -1.94
USP54-217ENST00000498213 A0A087WXM4 84 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 A0A0B4J203 849 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 KIR2DL5BA0A0G2JN68 375 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 KIR2DL5BA0A0G2JPC4 375 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 C13orf42A0A1B0GVH6 325 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 PRR32B1ATL7 298 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 M0R2N4 97 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 LGALS9O00182 355 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 ATP6V0E1O15342 81 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 TPPPO94811 219 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 RPP14O95059 124 aaKnown RBP2.9□□□□□ -1.95
USP54-217ENST00000498213 TFF1P04155 84 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CD5P06127 495 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CDK1P06493 297 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 MRPL3P09001 348 aaKnown RBP2.9□□□□□ -1.95
USP54-217ENST00000498213 ZBTB25P24278 435 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CD24P25063 80 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 SSTR5P35346 364 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 TGFBR1P36897 503 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 RPL5P46777 297 aaKnown RBP2.9□□□□□ -1.95
USP54-217ENST00000498213 CAMPP49913 170 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 SNRPEP62304 92 aaKnown RBP2.9□□□□□ -1.95
USP54-217ENST00000498213 ZNF85Q03923 595 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CBX3Q13185 183 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 ARL6IP1Q15041 203 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 KLK9Q2XQG4 91 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CNPY1Q3B7I2 92 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 MORN2Q502X0 79 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 ACTBL2Q562R1 376 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CT45A1Q5HYN5 189 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 OR4A47Q6IF82 309 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 TMPRSS11AQ6ZMR5 421 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 SLC16A13Q7RTY0 426 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 SLC25A42Q86VD7 318 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 KIR2DL5AQ8N109 375 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 ZNF383Q8NA42 475 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 POC5Q8NA72 575 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 OR52I1Q8NGK6 324 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 OR13F1Q8NGS4 319 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 OR13C9Q8NGT0 318 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 KIR2DL5BQ8NHK3 375 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CT45A3Q8NHU0 189 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 TNFAIP8L1Q8WVP5 186 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 PHYHIPQ92561 330 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 DLX4Q92988 240 aaPredicted RBP2.9□□□□□ -1.95
USP54-217ENST00000498213 FAM46BQ96A09 425 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 YIPF6Q96EC8 236 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 ADTRPQ96IZ2 230 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 GFI1Q99684 422 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 PYGO2Q9BRQ0 406 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 CCDC90BQ9GZT6 254 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 TUBA4BQ9H853 241 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 ACOT13Q9NPJ3 140 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 ZC4H2Q9NQZ6 224 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 BATF3Q9NR55 127 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 KLK9Q9UKQ9 250 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 WASHC3Q9Y3C0 194 aa2.9□□□□□ -1.95
USP54-217ENST00000498213 TEX13DA0A0J9YY54 714 aaPredicted RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 SMIM31A0A1B0GVY4 71 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 C12orf77C9JDV5 145 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 H7C423 109 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GABRPO00591 440 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 PDCD6O75340 191 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SLC22A5O76082 557 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SCGB1D1O95968 90 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 DHFRP00374 187 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 LALBAP00709 142 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 HBZP02008 142 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 APOA2P02652 100 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GSTT2P0CG29 244 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GSTT2BP0CG30 244 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 LIMS3P0CW19 117 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 LIMS4P0CW20 117 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 MYL12AP19105 171 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GALP22466 123 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 PSMB6P28072 239 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 BMI1P35226 326 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GNG10P50151 68 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 ETV1P50549 477 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GTF2A1P52655 376 aaPredicted RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 HCCSP53701 268 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 CX3CL1P78423 397 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 EWSR1Q01844 656 aaKnown RBP eCLIP2.89□□□□□ -1.95
USP54-217ENST00000498213 TNFRSF9Q07011 255 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SCN1BQ07699 218 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 ST3GAL4Q11206 333 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 HMGN3Q15651 99 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SYT6Q5T7P8 510 aaPredicted RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 OR2G6Q5TZ20 316 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 UBE2UQ5VVX9 321 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GPR107Q5VW38 600 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 ZNF343Q6P1L6 599 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms