RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 USE1Q9NZ43 259 aa2.14□□□□□ -2.07
SMC4-224ENST00000494612 POLR3HQ9Y535 204 aaPredicted RBP2.14□□□□□ -2.07
SMC4-224ENST00000494612 NIPBLQ6KC79 2804 aaeCLIP2.14□□□□□ -2.07
SMC4-224ENST00000494612 PRRC2CQ9Y520 2896 aaKnown RBP2.14□□□□□ -2.07
SMC4-224ENST00000494612 TRAV17A0A0B4J275 112 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 A0A0B4J2C4 111 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 DAPL1A0PJW8 107 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 E7EQ34 232 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 F5H5K5 113 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 H3BQ85 93 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 GPR171O14626 319 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 FGF16O43320 207 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 HPGDSO60760 199 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 UGT2B11O75310 529 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 SOD1P00441 154 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 CECR9P0C854 216 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 OCM2P0CE71 109 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 SCGB1C2P0DMR2 95 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 PYCR1P32322 319 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 COILP38432 576 aaPredicted RBP2.13□□□□□ -2.07
SMC4-224ENST00000494612 CBX5P45973 191 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 TPI1P60174 286 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 MED21Q13503 144 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 ZNF141Q15928 474 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 TTC33Q6PID6 262 aaPredicted RBP2.13□□□□□ -2.07
SMC4-224ENST00000494612 OOSP2Q86WS3 158 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 AMN1Q8IY45 258 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 ZNF565Q8N9K5 539 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 TMEM35BQ8NCS4 154 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 SCGB1C1Q8TD33 95 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 RMND5BQ96G75 393 aaPredicted RBP2.13□□□□□ -2.07
SMC4-224ENST00000494612 YPEL4Q96NS1 127 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 SMR3AQ99954 134 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 SPANXB1Q9NS25 103 aaPredicted RBP2.13□□□□□ -2.07
SMC4-224ENST00000494612 FGFR1OP2Q9NVK5 253 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 FAM206AQ9NX38 181 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 CARHSP1Q9Y2V2 147 aaKnown RBP2.13□□□□□ -2.07
SMC4-224ENST00000494612 PCYT1BQ9Y5K3 369 aaPredicted RBP2.13□□□□□ -2.07
SMC4-224ENST00000494612 NUP210LQ5VU65 1888 aa2.13□□□□□ -2.07
SMC4-224ENST00000494612 DIDO1Q9BTC0 2240 aaKnown RBP2.13□□□□□ -2.07
SMC4-224ENST00000494612 ABCA2Q9BZC7 2435 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 TRAV8-3A0A0A6YYJ7 113 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 PGPA6NDG6 321 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 CD300LBA8K4G0 201 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 C15orf65H3BRN8 121 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 K7ERS5 55 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 CCRL2O00421 344 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 GYG2O15488 501 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 PDCD6O75340 191 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 KLF7O75840 302 aaPredicted RBP2.12□□□□□ -2.07
SMC4-224ENST00000494612 IGKV1D-33P01593 117 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 IGKV1-33P01594 117 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 HIST1H1CP16403 213 aaKnown RBP2.12□□□□□ -2.07
SMC4-224ENST00000494612 ZNF7P17097 686 aaPredicted RBP2.12□□□□□ -2.07
SMC4-224ENST00000494612 TGFBR2P37173 567 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 HSPA9P38646 679 aaKnown RBP2.12□□□□□ -2.07
SMC4-224ENST00000494612 DCDP81605 110 aaKnown RBP2.12□□□□□ -2.07
SMC4-224ENST00000494612 ENDOGQ14249 297 aaKnown RBP2.12□□□□□ -2.07
SMC4-224ENST00000494612 KRTAP25-1Q3LHN0 102 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 WDR59Q6PJI9 974 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 TRAPPC5Q8IUR0 188 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 ZFP82Q8N141 532 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 UMODL1-AS1Q8N2C9 162 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 OR4P4Q8NGL7 312 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 CASTOR1Q8WTX7 329 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 FAM172AQ8WUF8 416 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 YIPF5Q969M3 257 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 SMIM12Q96EX1 92 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 COX14Q96I36 57 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 TM2D3Q9BRN9 247 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 TMEM208Q9BTX3 173 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 POTEKPQ9BYX7 375 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 GABARAPL1Q9H0R8 117 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 METTL9Q9H1A3 318 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 OR51E2Q9H255 320 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 LRRC19Q9H756 370 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 SLC23A2Q9UGH3 650 aa2.12□□□□□ -2.07
SMC4-224ENST00000494612 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.12□□□□□ -2.07
SMC4-224ENST00000494612 MDC1Q14676 2089 aaKnown RBP2.11□□□□□ -2.07
SMC4-224ENST00000494612 RP1L1Q8IWN7 2480 aaPredicted RBP2.11□□□□□ -2.07
SMC4-224ENST00000494612 ZGRF1Q86YA3 2104 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 GOLGA6L4A6NEF3 574 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 METTL15A6NJ78 407 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 ZNF729A6NN14 1252 aaPredicted RBP2.11□□□□□ -2.07
SMC4-224ENST00000494612 F5H768 121 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 H0Y980 276 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 K7EPK0 472 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 PHYHO14832 338 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 FFAR1O14842 300 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 PFDN6O15212 129 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 SYNGR1O43759 233 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 SSNA1O43805 119 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 OR2B3O76000 313 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 SOX14O95416 240 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 HLA-AP01891 365 aaKnown RBP2.11□□□□□ -2.07
SMC4-224ENST00000494612 COX5BP10606 129 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 PPP1R2P41236 205 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 SPINT3P49223 89 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 MAXP61244 160 aa2.11□□□□□ -2.07
SMC4-224ENST00000494612 TBC1D28Q2M2D7 210 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms