RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 OR4A5Q8NH83 315 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 USMG5Q96IX5 58 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 SLIRPQ9GZT3 109 aaKnown RBP13.88□□□□□ -0.19
COL9A3-214ENST00000490398 COMMD9Q9P000 198 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 PEF1Q9UBV8 284 aaKnown RBP13.88□□□□□ -0.19
COL9A3-214ENST00000490398 NSG2Q9Y328 171 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 S4R3C0 116 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 NPIPB5A8MRT5 1133 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 IGKV1-39P01597 117 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 IGKV1D-39P04432 117 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 CRYGCP07315 174 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 CTRB1P17538 263 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 PSMB6P28072 239 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 G6PCP35575 357 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 UCP3P55916 312 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 EXOSC2Q13868 293 aaKnown RBP13.87□□□□□ -0.19
COL9A3-214ENST00000490398 KLF5Q13887 457 aaPredicted RBP13.87□□□□□ -0.19
COL9A3-214ENST00000490398 CTRB2Q6GPI1 263 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 IL34Q6ZMJ4 242 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 CMTM1Q8IZ96 169 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 DMBX1Q8NFW5 382 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 OR10W1Q8NGF6 305 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 CD300LFQ8TDQ1 290 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 BORCS5Q969J3 196 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 BCL7BQ9BQE9 202 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 LSM4Q9Y4Z0 139 aaKnown RBP13.87□□□□□ -0.19
COL9A3-214ENST00000490398 DMRT1Q9Y5R6 373 aa13.87□□□□□ -0.19
COL9A3-214ENST00000490398 IGLC7A0M8Q6 106 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 DBX1A6NMT0 343 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 MARCH11A6NNE9 402 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 KRASP01116 189 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 IGHV3-23P01764 117 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 SYNJ2BPP57105 145 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 ATP5G2Q06055 141 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 RNASE10Q5GAN6 216 aaKnown RBP13.86□□□□□ -0.19
COL9A3-214ENST00000490398 FAAP20Q6NZ36 180 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 ZNF429Q86V71 674 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 MRGPRFQ96AM1 343 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 ZNF257Q9Y2Q1 563 aa13.86□□□□□ -0.19
COL9A3-214ENST00000490398 TEX50A0A1B0GTY4 177 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 DPPA5A6NC42 116 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 FAM223BA6NKX1 122 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 GABARAPH6UMI1 98 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 BMPR1BO00238 502 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 TPPPO94811 219 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 CD74P04233 296 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 SPNP16150 400 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 INSL3P51460 131 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 C15orf32Q32M92 178 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 SLC25A42Q86VD7 318 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 FAM223AQ8IWN6 122 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 SLC38A6Q8IZM9 456 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 TMEM229BQ8NBD8 167 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 NECAP1Q8NC96 275 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 DIRAS2Q96HU8 199 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 C6orf62Q9GZU0 229 aaPredicted RBP13.85□□□□□ -0.19
COL9A3-214ENST00000490398 FBXL7Q9UJT9 491 aa13.85□□□□□ -0.19
COL9A3-214ENST00000490398 ZNF256Q9Y2P7 627 aaPredicted RBP13.85□□□□□ -0.19
COL9A3-214ENST00000490398 PPP5D1E7EU14 171 aa13.84□□□□□ -0.19
COL9A3-214ENST00000490398 HLA-AP01891 365 aaKnown RBP13.84□□□□□ -0.19
COL9A3-214ENST00000490398 ZP3P21754 424 aa13.84□□□□□ -0.19
COL9A3-214ENST00000490398 PPP5CP53041 499 aa13.84□□□□□ -0.19
COL9A3-214ENST00000490398 AIFM2Q9BRQ8 373 aa13.84□□□□□ -0.19
COL9A3-214ENST00000490398 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.83□□□□□ -0.2
COL9A3-214ENST00000490398 LY86O95711 162 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 IFNA6P05013 189 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 EDN2P20800 178 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 WT1-ASQ06250 92 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 IL18Q14116 193 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 KLK9Q2XQG4 91 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 C11orf87Q6NUJ2 197 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 STEAP1BQ6NZ63 245 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 LPCAT3Q6P1A2 487 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 SMIM4Q8WVI0 70 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 COMMD5Q9GZQ3 224 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 NXF2Q9GZY0 626 aaKnown RBP13.83□□□□□ -0.2
COL9A3-214ENST00000490398 KLK9Q9UKQ9 250 aa13.83□□□□□ -0.2
COL9A3-214ENST00000490398 IGLV11-55A0A075B6I3 123 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 MFSD2BA6NFX1 497 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 RAB3DO95716 219 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 PGAM2P15259 253 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 TNFSF8P32971 234 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 TAS2R19P59542 299 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 ERVK-16P61578 105 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 IZUMO4Q1ZYL8 232 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 ARRDC1Q8N5I2 433 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 OR9G4Q8NGQ1 327 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 C15orf40Q8WUR7 153 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 SEC22AQ96IW7 307 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 CCDC140Q96MF4 163 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 OR4C12Q96R67 309 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 SOSTQ9BQB4 213 aa13.82□□□□□ -0.2
COL9A3-214ENST00000490398 QTRT1Q9BXR0 403 aaKnown RBP13.82□□□□□ -0.2
COL9A3-214ENST00000490398 RBM38Q9H0Z9 239 aaKnown RBP13.82□□□□□ -0.2
COL9A3-214ENST00000490398 ZMAT5Q9UDW3 170 aaKnown RBP13.82□□□□□ -0.2
COL9A3-214ENST00000490398 CTDSPLO15194 276 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 NOL3O60936 208 aaKnown RBP13.81□□□□□ -0.2
COL9A3-214ENST00000490398 IGLV1-51P01701 117 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 CSN3P07498 182 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 TRAPPC2P0DI81 140 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms