RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SPNS3Q6ZMD2 512 aa9.96□□□□□ -0.82
HDAC6-230ENST00000488543 TCTEX1D1Q8N7M0 179 aa9.96□□□□□ -0.82
HDAC6-230ENST00000488543 LINC00469Q8N7U9 141 aa9.96□□□□□ -0.82
HDAC6-230ENST00000488543 SSX3Q99909 188 aa9.96□□□□□ -0.82
HDAC6-230ENST00000488543 RPRMQ9NS64 109 aa9.96□□□□□ -0.82
HDAC6-230ENST00000488543 KIAA1456Q9P272 454 aa9.96□□□□□ -0.82
HDAC6-230ENST00000488543 RPUSD1Q9UJJ7 312 aaKnown RBP9.96□□□□□ -0.82
HDAC6-230ENST00000488543 GAB2Q9UQC2 676 aa9.96□□□□□ -0.82
HDAC6-230ENST00000488543 DVL1O14640 695 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 NDUFB3O43676 98 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 SMIM6P0DI80 62 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 RPL31P62899 125 aaKnown RBP9.95□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF816Q0VGE8 651 aaPredicted RBP9.95□□□□□ -0.82
HDAC6-230ENST00000488543 ELOBQ15370 118 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 TMEM30BQ3MIR4 351 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 MALRD1Q5VYJ5 2156 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 IGHV2-70P01814 119 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 CCL3L1P16619 93 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 TMEM11P17152 192 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 TAS2R30P59541 319 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 LRRC10Q5BKY1 277 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 STX12Q86Y82 276 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF251Q9BRH9 671 aa9.95□□□□□ -0.82
HDAC6-230ENST00000488543 M0R1X1 148 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 CYB5BO43169 146 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 FSTL3O95633 263 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 DEFA4P12838 97 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 MMP9P14780 707 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 COX6B1P14854 86 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 RAB7AP51149 207 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 SPINK9Q5DT21 86 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 SPANXN5Q5MJ07 72 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 HIST2H2BCQ6DN03 193 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 TET2Q6N021 2002 aaPredicted RBP9.94□□□□□ -0.82
HDAC6-230ENST00000488543 A0A1B0GW64 132 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 G6PCP35575 357 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 DLX6P56179 175 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 TLE4Q04727 773 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF506Q5JVG8 444 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 OR8G2PQ6IF36 304 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 OR10A7Q8NGE5 316 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 NEU4Q8WWR8 484 aaPredicted RBP9.94□□□□□ -0.82
HDAC6-230ENST00000488543 DDB2Q92466 427 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 H1FXQ92522 213 aaKnown RBP9.94□□□□□ -0.82
HDAC6-230ENST00000488543 GNPNAT1Q96EK6 184 aaPredicted RBP9.94□□□□□ -0.82
HDAC6-230ENST00000488543 GAL3ST2Q9H3Q3 398 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 TMPRSS5Q9H3S3 457 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 PSENENQ9NZ42 101 aa9.94□□□□□ -0.82
HDAC6-230ENST00000488543 SAA2-SAA4A0A096LPE2 208 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 UBE2L5PA0A1B0GUS4 154 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 LOC102723971A0A1B0GUV8 181 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 OVOL3O00110 214 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 S100A8P05109 93 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 SAA2P0DJI9 122 aaPredicted RBP9.93□□□□□ -0.82
HDAC6-230ENST00000488543 FAM209BQ5JX69 171 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.93□□□□□ -0.82
HDAC6-230ENST00000488543 RBMXL1Q96E39 390 aaKnown RBP9.93□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF714Q96N38 554 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 FASNP49327 2511 aaKnown RBP9.93□□□□□ -0.82
HDAC6-230ENST00000488543 ARHGAP32A7KAX9 2087 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 KRASP01116 189 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 IFNA5P01569 189 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 IFNA17P01571 189 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 TRGC2P03986 189 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 GNG10P50151 68 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 BAXQ07812 192 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF787Q6DD87 383 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF841Q6ZN19 808 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 SLC25A48Q6ZT89 311 aaKnown RBP9.93□□□□□ -0.82
HDAC6-230ENST00000488543 TVP23CQ96ET8 276 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 NIPSNAP3BQ9BS92 247 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 DOK5Q9P104 306 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 ZNRD1Q9P1U0 126 aa9.93□□□□□ -0.82
HDAC6-230ENST00000488543 SYNGR2O43760 224 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 CLEC12BQ2HXU8 276 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 TMEM155Q4W5P6 130 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 FAM90A2PQ658T7 463 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 ZNF525Q8N782 197 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 IGFBPL1Q8WX77 278 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 MALSU1Q96EH3 234 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 RCC1LQ96I51 464 aaKnown RBP9.92□□□□□ -0.82
HDAC6-230ENST00000488543 RAB29O14966 203 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 FCGR3BO75015 233 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 EFNA4P52798 201 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 KRTAP10-9P60411 292 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 RAB2AP61019 212 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 MRPS11P82912 194 aaKnown RBP9.92□□□□□ -0.82
HDAC6-230ENST00000488543 GATAD1Q8WUU5 269 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 CCL19Q99731 98 aa9.92□□□□□ -0.82
HDAC6-230ENST00000488543 APCP25054 2843 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 CEBPZOSA8MTT3 80 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 RBFOX2O43251 390 aaKnown RBP eCLIP9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BKO60814 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 IGKV1D-33P01593 117 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 IGKV1-33P01594 117 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 IGHV4-39P01824 125 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HSPB1P04792 205 aaKnown RBP9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BJP06899 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BOP23527 126 aa9.91□□□□□ -0.82
HDAC6-230ENST00000488543 HIST1H2BBP33778 126 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms