RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 RND3P61587 244 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 RPL30P62888 115 aaKnown RBP6.88□□□□□ -1.31
USP4-213ENST00000488520 CD83Q01151 205 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 TMEM177Q53S58 311 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 KHDC1LQ5JSQ8 128 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 CENPVQ7Z7K6 275 aaPredicted RBP6.88□□□□□ -1.31
USP4-213ENST00000488520 ZNF695Q8IW36 515 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 CENPSQ8N2Z9 138 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 LINC00482Q8N8I6 264 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 CLCC1Q96S66 551 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 GPHA2Q96T91 129 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 B9D2Q9BPU9 175 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 SPATA25Q9BR10 227 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 METTL1Q9UBP6 276 aaKnown RBP6.88□□□□□ -1.31
USP4-213ENST00000488520 RRHO14718 337 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 PLA2G10O15496 165 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 RBFOX2O43251 390 aaKnown RBP eCLIP6.87□□□□□ -1.313e-6■■■■□ 21.5
USP4-213ENST00000488520 RBMXL2O75526 392 aaKnown RBP6.87□□□□□ -1.31
USP4-213ENST00000488520 SNAPC5O75971 98 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 NDUFB6O95139 128 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 SPDEFO95238 335 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 TCRBP04435 133 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 F2RL1P55085 397 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 TMEM267Q0VDI3 215 aaPredicted RBP6.87□□□□□ -1.31
USP4-213ENST00000488520 ASAH1Q13510 395 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 PSG5Q15238 335 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 C4orf46Q504U0 113 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 TMEM128Q5BJH2 165 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 TCTEX1D4Q5JR98 221 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 C10orf99Q6UWK7 81 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 H2BFWTQ7Z2G1 175 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 FOXRED2Q8IWF2 684 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 TEX45Q8NA69 505 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 NPBQ8NG41 125 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 ABHD5Q8WTS1 349 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 DDB2Q92466 427 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 RRNAD1Q96FB5 475 aaKnown RBP6.87□□□□□ -1.31
USP4-213ENST00000488520 RTBDNQ9BSG5 229 aaPredicted RBP6.87□□□□□ -1.31
USP4-213ENST00000488520 GON7Q9BXV9 100 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 NAA60Q9H7X0 242 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 PLEKHA2Q9HB19 425 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 FAM212BQ9NTI7 297 aaPredicted RBP6.87□□□□□ -1.31
USP4-213ENST00000488520 NUBP2Q9Y5Y2 271 aa6.87□□□□□ -1.31
USP4-213ENST00000488520 H0Y980 276 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 SLC25A17O43808 307 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 OR2A4O95047 310 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 DHFRP00374 187 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 KRASP01116 189 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 IGKV1-16P04430 117 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 UBE2MP61081 183 aaKnown RBP6.86□□□□□ -1.31
USP4-213ENST00000488520 UBE2KP61086 200 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 GNB1P62873 340 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 SRPXP78539 464 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 DCTN2Q13561 401 aaKnown RBP6.86□□□□□ -1.31
USP4-213ENST00000488520 C5orf64Q2M2E5 130 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 SP6Q3SY56 376 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 PLET1Q6UQ28 207 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 SSX9Q7RTT3 188 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 SLC35E3Q7Z769 313 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 SLC25A42Q86VD7 318 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 PPP1R27Q86WC6 154 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 ADAD2Q8NCV1 583 aaKnown RBP6.86□□□□□ -1.31
USP4-213ENST00000488520 OR4A16Q8NH70 328 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 OR4A5Q8NH83 315 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 C5orf30Q96GV9 206 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 RITA1Q96K30 269 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 OR2A7Q96R45 310 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 FBXL15Q9H469 300 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 C5orf66Q9H5L9 145 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 PALMDQ9NP74 551 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 FKBP11Q9NYL4 201 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 COMMD9Q9P000 198 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 VSIG4Q9Y279 399 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 TSSC4Q9Y5U2 329 aaPredicted RBP6.86□□□□□ -1.31
USP4-213ENST00000488520 TENM2Q9NT68 2774 aa6.86□□□□□ -1.31
USP4-213ENST00000488520 TRAV6A0A075B6T7 132 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 CRYM-AS1A6NIL9 109 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 SH2D7A6NKC9 451 aaPredicted RBP6.85□□□□□ -1.31
USP4-213ENST00000488520 ARPC1BO15143 372 aaKnown RBP6.85□□□□□ -1.31
USP4-213ENST00000488520 RAMP3O60896 148 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 OR5AC1P0C628 307 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 CNTFRP26992 372 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 SLC6A1P30531 599 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 MAS1LP35410 378 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 AKR1C2P52895 323 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 SLC35B1P78383 322 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 EIF4EBP1Q13541 118 aaPredicted RBP6.85□□□□□ -1.31
USP4-213ENST00000488520 ZNF562Q6V9R5 426 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 MMD2Q8IY49 270 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 LGI3Q8N145 548 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 Q8N6K4 173 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 C5orf56Q8N8D9 126 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 Q8N9W7 124 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 COQ8AQ8NI60 647 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 CASTOR1Q8WTX7 329 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 DPF1Q92782 380 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 PHB2Q99623 299 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 PDCD10Q9BUL8 212 aa6.85□□□□□ -1.31
USP4-213ENST00000488520 GPN1Q9HCN4 374 aaPredicted RBP6.85□□□□□ -1.31
USP4-213ENST00000488520 PLSCR3Q9NRY6 295 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms