RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 RGS21Q2M5E4 152 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 LYG2Q86SG7 212 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 FAM219AQ8IW50 185 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 SELENOHQ8IZQ5 122 aaKnown RBP8.14□□□□□ -1.11
SKA1-204ENST00000488454 CADM3Q8N126 398 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 OR4A16Q8NH70 328 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 LINC01006Q8NI28 216 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 TMEM167AQ8TBQ9 72 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 SEC22AQ96IW7 307 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 TMEM56Q96MV1 263 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 PHB2Q99623 299 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 HSPB9Q9BQS6 159 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 COMMD5Q9GZQ3 224 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 OR51J1Q9H342 316 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 ZNF430Q9H8G1 570 aaPredicted RBP8.14□□□□□ -1.11
SKA1-204ENST00000488454 GPN1Q9HCN4 374 aaPredicted RBP8.14□□□□□ -1.11
SKA1-204ENST00000488454 PARP11Q9NR21 331 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 FKBP11Q9NYL4 201 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 TMEM56-RWDD3S4R434 201 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 CUBNO60494 3623 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 DUS4LO95620 317 aaKnown RBP8.13□□□□□ -1.11
SKA1-204ENST00000488454 IGKV1-39P01597 117 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 IGKV1D-39P04432 117 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 HLA-GP17693 338 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 MDKP21741 143 aaPredicted RBP8.13□□□□□ -1.11
SKA1-204ENST00000488454 VDAC1P21796 283 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 SLC35B1P78383 322 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 PJVKQ0ZLH3 352 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 DHRS2Q13268 280 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 GRPEL2Q8TAA5 225 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 CHPT1Q8WUD6 406 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 ARPC1AQ92747 370 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 SPIN2AQ99865 258 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 SPIN2BQ9BPZ2 258 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 PRR13Q9NZ81 148 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 PRNDQ9UKY0 176 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 MMP24Q9Y5R2 645 aa8.13□□□□□ -1.11
SKA1-204ENST00000488454 A0A0B4J2A0 478 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 DUXBA0A1W2PPF3 345 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 MSGN1A6NI15 193 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 LINC01548A6NM66 108 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 PRAF2O60831 178 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 IFNA21P01568 189 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 OPN1MWP04001 364 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 IGF1P05019 195 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 IL5P05113 134 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 FGF2P09038 288 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 OPN1MW2P0DN77 364 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 OPN1MW3P0DN78 364 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 RPL27AP46776 148 aaKnown RBP8.12□□□□□ -1.11
SKA1-204ENST00000488454 MECP2P51608 486 aaKnown RBP8.12□□□□□ -1.11
SKA1-204ENST00000488454 C12orf54Q6X4T0 127 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 LYZL2Q7Z4W2 148 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 STPG2Q8N412 459 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 SLC35G3Q8N808 338 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 UXS1Q8NBZ7 420 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 SGMS2Q8NHU3 365 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 ZNF431Q8TF32 576 aaPredicted RBP8.12□□□□□ -1.11
SKA1-204ENST00000488454 LSM10Q969L4 123 aaKnown RBP8.12□□□□□ -1.11
SKA1-204ENST00000488454 FYTTD1Q96QD9 318 aaKnown RBP8.12□□□□□ -1.11
SKA1-204ENST00000488454 MARVELD1Q9BSK0 173 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 PDCD10Q9BUL8 212 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 SERTAD4Q9NUC0 356 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 CACFD1Q9UGQ2 172 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 SHPKQ9UHJ6 478 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 LINC00527Q9UJ94 153 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 NSG2Q9Y328 171 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 OR51B2Q9Y5P1 312 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 NF1P21359 2839 aa8.12□□□□□ -1.11
SKA1-204ENST00000488454 TRAV3A0A0B4J244 114 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 TRAV41A0A0B4J266 112 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 PSMB11A5LHX3 300 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 ATP6V0E1O15342 81 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 IGKV1-5P01602 117 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 IL6RP08887 468 aaPredicted RBP8.11□□□□□ -1.11
SKA1-204ENST00000488454 HOXB5P09067 269 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 OR9G9P0C7N8 305 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 COMPP49747 757 aaPredicted RBP8.11□□□□□ -1.11
SKA1-204ENST00000488454 ECSCRQ19T08 205 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 TMEM95Q3KNT9 176 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 ANKRD55Q3KP44 614 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 AKIRIN2Q53H80 203 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 AWAT1Q58HT5 328 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 THOC7Q6I9Y2 204 aaKnown RBP8.11□□□□□ -1.11
SKA1-204ENST00000488454 UNQ5815/PRO19632Q6UWF5 114 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 KLHDC1Q8N7A1 406 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 LRTM2Q8N967 370 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 OR1L8Q8NGR8 309 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 LHFPL5Q8TAF8 219 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 MITD1Q8WV92 249 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 SRSF12Q8WXF0 261 aaKnown RBP8.11□□□□□ -1.11
SKA1-204ENST00000488454 GPR146Q96CH1 333 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 TMEM68Q96MH6 324 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 NOL4LQ96MY1 436 aaPredicted RBP8.11□□□□□ -1.11
SKA1-204ENST00000488454 SEC22CQ9BRL7 303 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 FAM103A1Q9BTL3 118 aaKnown RBP8.11□□□□□ -1.11
SKA1-204ENST00000488454 HINT2Q9BX68 163 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.11□□□□□ -1.11
SKA1-204ENST00000488454 TMED3Q9Y3Q3 217 aa8.11□□□□□ -1.11
SKA1-204ENST00000488454 WSB1Q9Y6I7 421 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms