RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CYB561P49447 251 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 OR1C1Q15619 314 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 MIC13Q5XKP0 118 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 PIP4P1Q86T03 277 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 KLHDC1Q8N7A1 406 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 CLUHP3Q96NS8 147 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 PINLYPA6NC86 204 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 MT-CO3P00414 261 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 SLC35E4Q6ICL7 350 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 Q6ZN92 141 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 OR8I2Q8N0Y5 310 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 ORAOV1Q8WV07 137 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 FAM90A9PA6NNJ1 464 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 FAM166BA8MTA8 275 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 OR5G3P0C626 314 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 TMPRSS3P57727 454 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 RHOBP62745 196 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 PPP1R35Q8TAP8 253 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 MS4A5Q9H3V2 200 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 HEYLQ9NQ87 328 aaPredicted RBP11.05□□□□□ -0.64
USP40-214ENST00000483519 LAMTOR2Q9Y2Q5 125 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 V9GYV3 84 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 FREM1Q5H8C1 2179 aa11.05□□□□□ -0.64
USP40-214ENST00000483519 LINC00473A8K010 186 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 NTN3O00634 580 aaPredicted RBP11.04□□□□□ -0.64
USP40-214ENST00000483519 PSPNO60542 156 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 IGLC2P0DOY2 106 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 IGLC3P0DOY3 106 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 TMPRSS7Q7RTY8 843 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 NANOS1Q8WY41 292 aaKnown RBP11.04□□□□□ -0.64
USP40-214ENST00000483519 RNF114Q9Y508 228 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 GVINP1Q7Z2Y8 2422 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 HYPMO75409 117 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 REG1AP05451 166 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 OR9G9P0C7N8 305 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 PMCHP20382 165 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 CLDN18P56856 261 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 STPG4Q8N801 248 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 ST6GALNAC3Q8NDV1 305 aa11.04□□□□□ -0.64
USP40-214ENST00000483519 AQP7O14520 342 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 OR10J4P0C629 311 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 AREGP15514 252 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 OTX2P32243 289 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 CEBPDP49716 269 aaPredicted RBP11.03□□□□□ -0.64
USP40-214ENST00000483519 CX3CL1P78423 397 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 PLGLB1Q02325 96 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 GTF3C1Q12789 2109 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 PRAMEF5Q5TYX0 476 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 PRAMEF6Q5VXH4 476 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 MED12LQ86YW9 2145 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 OR4A16Q8NH70 328 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 J3QW42 95 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 ZNF324O75467 553 aaPredicted RBP11.03□□□□□ -0.64
USP40-214ENST00000483519 CCL4P13236 92 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 GABRA2P47869 451 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 GNG4P50150 75 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 PTTG1IPP53801 180 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 Q0VFX4 171 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 EFNB3Q15768 340 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 FAM53AQ6NSI3 398 aaPredicted RBP11.03□□□□□ -0.64
USP40-214ENST00000483519 OR52E5Q8NH55 327 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 B4GALT7Q9UBV7 327 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 ARL2-SNX15V9GYD0 113 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 USF3Q68DE3 2245 aa11.03□□□□□ -0.64
USP40-214ENST00000483519 A0A1W2PS18 150 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 PRSS46E5RG02 174 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 ACP1P24666 158 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 AESQ08117 197 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 TBC1D28Q2M2D7 210 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 LEMD1Q68G75 181 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 C19orf35Q6ZS72 473 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 PPP1R32Q7Z5V6 425 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 GCNT2Q8N0V5 402 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 MRGPRDQ8TDS7 321 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 GP6Q9HCN6 339 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 NPVFQ9HCQ7 196 aa11.02□□□□□ -0.64
USP40-214ENST00000483519 PIEZO1Q92508 2521 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 DPRXA6NFQ7 191 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 TM4SF5O14894 197 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 NDUFB8O95169 186 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 HLA-DQA1P01909 254 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 FRMD6-AS1P0C7T7 363 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 BMI1P35226 326 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 GNG10P50151 68 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 PRRX1P54821 245 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 RAB31Q13636 194 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 GABRA6Q16445 453 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 TMEM136Q6ZRR5 245 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 SSMEM1Q8WWF3 244 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 GAL3ST2Q9H3Q3 398 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 PSG11Q9UQ72 335 aa11.02□□□□□ -0.65
USP40-214ENST00000483519 GRPP07492 148 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 ZNF83P51522 516 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 KLF3P57682 345 aaPredicted RBP11.01□□□□□ -0.65
USP40-214ENST00000483519 CENPWQ5EE01 88 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 DEFB124Q8NES8 71 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 BORCS7Q96B45 105 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 HES4Q9HCC6 221 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 SEPSECSQ9HD40 501 aaKnown RBP11.01□□□□□ -0.65
USP40-214ENST00000483519 LSM4Q9Y4Z0 139 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms