RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ABHD5Q8WTS1 349 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 COMMD5Q9GZQ3 224 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 ZNF702PQ9H963 129 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.68□□□□□ -0.86
SDC1-206ENST00000482879 FKBP11Q9NYL4 201 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 OR51B2Q9Y5P1 312 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 CUBNO60494 3623 aa9.68□□□□□ -0.86
SDC1-206ENST00000482879 TEX50A0A1B0GTY4 177 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 C13orf42A0A1B0GVH6 325 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 C5orf51A6NDU8 294 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 C15orf61A6NNL5 157 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 KCNAB3O43448 404 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 TSPAN9O75954 239 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 OPN1MWP04001 364 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 FGF2P09038 288 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 OPN1MW2P0DN77 364 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 OPN1MW3P0DN78 364 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 SLC25A6P12236 298 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 RPL27AP46776 148 aaKnown RBP9.67□□□□□ -0.86
SDC1-206ENST00000482879 COMPP49747 757 aaPredicted RBP9.67□□□□□ -0.86
SDC1-206ENST00000482879 SSBP2P81877 361 aaPredicted RBP9.67□□□□□ -0.86
SDC1-206ENST00000482879 NDPQ00604 133 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 C2orf68Q2NKX9 166 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 C10orf55Q5SWW7 151 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 Q6ZNX1 250 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 PRIMA1Q86XR5 153 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 FOXRED2Q8IWF2 684 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 Q8N2B8 174 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 OR1L8Q8NGR8 309 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 OR1S1Q8NH92 325 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 GRPEL2Q8TAA5 225 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 ARPC1AQ92747 370 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 SPIN2AQ99865 258 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 SPIN2BQ9BPZ2 258 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 QTRT1Q9BXR0 403 aaKnown RBP9.67□□□□□ -0.86
SDC1-206ENST00000482879 MED28Q9H204 178 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 PARP11Q9NR21 331 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 TMEM14BQ9NUH8 114 aa9.67□□□□□ -0.86
SDC1-206ENST00000482879 FOXA2Q9Y261 457 aaPredicted RBP9.67□□□□□ -0.86
SDC1-206ENST00000482879 MSGN1A6NI15 193 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 MPTX1A8MV57 137 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 GOSR2O14653 212 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 ATP6V0E1O15342 81 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 ST8SIA3O43173 380 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 NDUFA7O95182 113 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 HSPE1P61604 102 aaKnown RBP9.66□□□□□ -0.86
SDC1-206ENST00000482879 IAH1Q2TAA2 248 aaPredicted RBP9.66□□□□□ -0.86
SDC1-206ENST00000482879 GSG1LQ6UXU4 331 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 ZNF429Q86V71 674 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 OR2T6Q8NHC8 308 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 SRSF12Q8WXF0 261 aaKnown RBP9.66□□□□□ -0.86
SDC1-206ENST00000482879 OR10C1Q96KK4 312 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 FYTTD1Q96QD9 318 aaKnown RBP9.66□□□□□ -0.86
SDC1-206ENST00000482879 FAM103A1Q9BTL3 118 aaKnown RBP9.66□□□□□ -0.86
SDC1-206ENST00000482879 PDCD10Q9BUL8 212 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 HINT2Q9BX68 163 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 COA4Q9NYJ1 87 aa9.66□□□□□ -0.86
SDC1-206ENST00000482879 E7EUB6 86 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 AP4M1O00189 453 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 PITX3O75364 302 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 SIX6O95475 246 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 IFNA17P01571 189 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 TRAPPC2P0DI81 140 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 TRAPPC2BP0DI82 140 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 EGR2P11161 476 aaPredicted RBP9.65□□□□□ -0.86
SDC1-206ENST00000482879 VDAC2P45880 294 aaPredicted RBP9.65□□□□□ -0.86
SDC1-206ENST00000482879 TMEM95Q3KNT9 176 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 ZBTB8BQ8NAP8 495 aaPredicted RBP9.65□□□□□ -0.86
SDC1-206ENST00000482879 OR4F5Q8NH21 305 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 OR5B3Q8NH48 314 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 SGMS2Q8NHU3 365 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 C2orf50Q96LR7 162 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 NOL4LQ96MY1 436 aaPredicted RBP9.65□□□□□ -0.86
SDC1-206ENST00000482879 C16orf95Q9H693 158 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 GSKIPQ9P0R6 139 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 MGAT4CQ9UBM8 478 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 LINC00527Q9UJ94 153 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 ZNF257Q9Y2Q1 563 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 FBXO7Q9Y3I1 522 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 WSB1Q9Y6I7 421 aa9.65□□□□□ -0.86
SDC1-206ENST00000482879 A0A1B0GW64 132 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 HMX3A6NHT5 357 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 CGB1A6NKQ9 187 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 NXPH3O95157 252 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 IGF1P05019 195 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 APELAP0DMC3 54 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 HKR1P10072 659 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 SPCS3P61009 180 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 TMEM267Q0VDI3 215 aaPredicted RBP9.64□□□□□ -0.87
SDC1-206ENST00000482879 FCN2Q15485 313 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 ECSCRQ19T08 205 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 AARDQ4LEZ3 155 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 SPINK9Q5DT21 86 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.64□□□□□ -0.87
SDC1-206ENST00000482879 LFNGQ8NES3 379 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 OR5M8Q8NGP6 311 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 OR52E5Q8NH55 327 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 NDUFA4L2Q9NRX3 87 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 CACFD1Q9UGQ2 172 aa9.64□□□□□ -0.87
SDC1-206ENST00000482879 ATRQ13535 2644 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms