RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 POU2AF1Q16633 256 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 DHRS11Q6UWP2 260 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 ADAMTSL5Q6ZMM2 481 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 CCDC140Q96MF4 163 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 AIFM2Q9BRQ8 373 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 TMEM140Q9NV12 185 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 SIGLEC8Q9NYZ4 499 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 PEMTQ9UBM1 199 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 PGLYRP1O75594 196 aaPredicted RBP11.3□□□□□ -0.6
LIMS3-204ENST00000482065 OR2C1O95371 312 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 SMIM18P0DKX4 95 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 HRH1P35367 487 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 CLEC19AQ6UXS0 136 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 SNX29P2Q8IUI4 249 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 LYSMD2Q8IV50 215 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 SGPP2Q8IWX5 399 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 Q8N402 240 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 DMBX1Q8NFW5 382 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 CD300LFQ8TDQ1 290 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 GPX8Q8TED1 209 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 THAP7Q9BT49 309 aaPredicted RBP11.3□□□□□ -0.6
LIMS3-204ENST00000482065 NAA50Q9GZZ1 169 aaKnown RBP11.3□□□□□ -0.6
LIMS3-204ENST00000482065 PLEKHA2Q9HB19 425 aa11.3□□□□□ -0.6
LIMS3-204ENST00000482065 IGLV11-55A0A075B6I3 123 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 IGLC7A0M8Q6 106 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 MFSD2BA6NFX1 497 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 HPGDSO60760 199 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 GGCTO75223 188 aaKnown RBP11.29□□□□□ -0.6
LIMS3-204ENST00000482065 DHFRP00374 187 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 APOA1P02647 267 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 DEFA4P12838 97 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 ELK1P19419 428 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 MECP2P51608 486 aaKnown RBP11.29□□□□□ -0.6
LIMS3-204ENST00000482065 LCN12Q6JVE5 192 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 BORCS5Q969J3 196 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 C19orf73Q9NVV2 129 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 COMMD9Q9P000 198 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 DNAH7Q8WXX0 4024 aa11.29□□□□□ -0.6
LIMS3-204ENST00000482065 SMIM31A0A1B0GVY4 71 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 F2RP25116 425 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 ARL3P36405 182 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 ERVK-16P61578 105 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 KLK9Q2XQG4 91 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 CD300EQ496F6 205 aaPredicted RBP11.28□□□□□ -0.6
LIMS3-204ENST00000482065 PHLDA2Q53GA4 152 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 FAM209BQ5JX69 171 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 OR10W1Q8NGF6 305 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 OR6F1Q8NGZ6 308 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 DYNLRB2Q8TF09 96 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 FCAMRQ8WWV6 532 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 EEF1AKMT3Q96AZ1 226 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 COMMD5Q9GZQ3 224 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 ZMAT4Q9H898 229 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 KLK9Q9UKQ9 250 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 SELENOKQ9Y6D0 94 aa11.28□□□□□ -0.6
LIMS3-204ENST00000482065 C2orf70A6NJV1 201 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 MARCH11A6NNE9 402 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 A8MZ25 164 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 GPR31O00270 319 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 HIST1H1BP16401 226 aaKnown RBP11.27□□□□□ -0.61
LIMS3-204ENST00000482065 LPAR6P43657 344 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 RORCP51449 518 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 ZNF585BQ52M93 769 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 RNASE12Q5GAN4 147 aaKnown RBP11.27□□□□□ -0.61
LIMS3-204ENST00000482065 GTSCR1Q86UQ5 136 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 CMTM1Q8IZ96 169 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 CACNG8Q8WXS5 425 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 DGCR14Q96DF8 476 aaKnown RBP11.27□□□□□ -0.61
LIMS3-204ENST00000482065 CMTM3Q96MX0 182 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 TM2D3Q9BRN9 247 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 QTRT1Q9BXR0 403 aaKnown RBP11.27□□□□□ -0.61
LIMS3-204ENST00000482065 ZC4H2Q9NQZ6 224 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 NSG2Q9Y328 171 aa11.27□□□□□ -0.61
LIMS3-204ENST00000482065 RYR3Q15413 4870 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 GABARAPO95166 117 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 KRASP01116 189 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 FOLR2P14207 255 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 G6PCP35575 357 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 TSPAN5P62079 268 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 CTF1Q16619 201 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 OR2K2Q8NGT1 345 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 SCPEP1Q9HB40 452 aa11.26□□□□□ -0.61
LIMS3-204ENST00000482065 TEX50A0A1B0GTY4 177 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 ZNF785A8K8V0 405 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 FAM25AB3EWG3 89 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 FAM25CB3EWG5 89 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 FAM25GB3EWG6 89 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 LGALS9O00182 355 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 TRAPPC2P0DI81 140 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 TRAPPC2BP0DI82 140 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 GPR183P32249 361 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 RCVRNP35243 200 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 CD81P60033 236 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 WT1-ASQ06250 92 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 DEFB114Q30KQ6 69 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 GPHB5Q86YW7 130 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 OR1L8Q8NGR8 309 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 CXorf58Q96LI9 332 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 SRSF8Q9BRL6 282 aaKnown RBP11.25□□□□□ -0.61
LIMS3-204ENST00000482065 HINT2Q9BX68 163 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms