RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 USP9XQ93008 2570 aaPredicted RBP11.86□□□□□ -0.51
CHD3-211ENST00000481999 PPIAL4EA0A075B759 164 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 PPIAL4DF5H284 164 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 YPEL1O60688 119 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 RBMXL2O75526 392 aaKnown RBP11.86□□□□□ -0.51
CHD3-211ENST00000481999 IGKV1D-33P01593 117 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 IGKV1-33P01594 117 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 CD55P08174 381 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 PPIAL4FP0DN26 164 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 NDUFA6P56556 154 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 MEF2BQ02080 365 aaPredicted RBP11.86□□□□□ -0.51
CHD3-211ENST00000481999 TRAT1Q6PIZ9 186 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 LYG1Q8N1E2 194 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 FAM210BQ96KR6 192 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 YPEL2Q96QA6 119 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 CTDSP1Q9GZU7 261 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 PPIAL4AQ9Y536 164 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 MYO18BQ8IUG5 2567 aa11.86□□□□□ -0.51
CHD3-211ENST00000481999 CHD6Q8TD26 2715 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 TRAV3A0A0B4J244 114 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 CTXND1A0A1B0GTU2 59 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 ZG16O60844 167 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 YIF1AO95070 293 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 SFTPCP11686 197 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 S100PP25815 95 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 APOBEC3AP31941 199 aaPredicted RBP11.85□□□□□ -0.51
CHD3-211ENST00000481999 ACSM6Q6P461 480 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 MUC15Q8N387 334 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 GFOD1Q9NXC2 390 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 PMS2P5A8MQ11 134 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 OR9G9P0C7N8 305 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 FGF7P21781 194 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 COL8A2P25067 703 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 RPL31P62899 125 aaKnown RBP11.85□□□□□ -0.51
CHD3-211ENST00000481999 WDR25Q64LD2 544 aaPredicted RBP11.85□□□□□ -0.51
CHD3-211ENST00000481999 EDARADDQ8WWZ3 215 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 NAT8Q9UHE5 227 aa11.85□□□□□ -0.51
CHD3-211ENST00000481999 PLXNB1O43157 2135 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BKO60814 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 OPN1MWP04001 364 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BJP06899 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 OPN1MW2P0DN77 364 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 OPN1MW3P0DN78 364 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BOP23527 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BBP33778 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 PSMB3P49720 205 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BDP58876 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BCP62807 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST2H2BEQ16778 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BHQ93079 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BNQ99877 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 HIST1H2BMQ99879 126 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 SMIM7Q9BQ49 75 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 TRAV38-1A0A0B4J264 116 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 TMEM250H0YL14 139 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 TRGC2P03986 189 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 S100A2P29034 98 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 CD81P60033 236 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 VWC2Q2TAL6 325 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 CYP2G1PQ6ZSU1 146 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 ZNF709Q8N972 641 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 OR10G9Q8NGN4 311 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 OR10G7Q8NGN6 311 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 MIOXQ9UGB7 285 aa11.84□□□□□ -0.51
CHD3-211ENST00000481999 TRBV24-1A0A075B6N3 115 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 IGHV1-69-2A0A0G2JMI3 117 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 A0A1W2PPR1 153 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 DVL1O14640 695 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 MYOD1P15172 320 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 REG1BP48304 166 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 TFF3Q07654 80 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 DIAPH2-AS1Q14236 149 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 TMEM200BQ69YZ2 307 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 R3HDM4Q96D70 268 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 QTRT1Q9BXR0 403 aaKnown RBP11.83□□□□□ -0.52
CHD3-211ENST00000481999 ACTR3CQ9C0K3 210 aaPredicted RBP11.83□□□□□ -0.52
CHD3-211ENST00000481999 SLC25A22Q9H936 323 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 MANBALQ9NQG1 85 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 SPG11Q96JI7 2443 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 CENPEQ02224 2701 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 WNK2Q9Y3S1 2297 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 LINC00587B1AMM8 73 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 SEC14L6B5MCN3 397 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 NDUFS6O75380 124 aaKnown RBP11.83□□□□□ -0.52
CHD3-211ENST00000481999 LY86O95711 162 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 GNB2P62879 340 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 TMEM241Q24JQ0 296 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 FBXL19-AS1Q494R0 122 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 FFAR4Q5NUL3 377 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 NPCDR1Q9BY65 106 aa11.83□□□□□ -0.52
CHD3-211ENST00000481999 GAR1Q9NY12 217 aaKnown RBP11.83□□□□□ -0.52
CHD3-211ENST00000481999 FAM208BQ5VWN6 2430 aa11.82□□□□□ -0.52
CHD3-211ENST00000481999 KBTBD11O94819 623 aa11.82□□□□□ -0.52
CHD3-211ENST00000481999 ZNF439Q8NDP4 499 aa11.82□□□□□ -0.52
CHD3-211ENST00000481999 DIRC2Q96SL1 478 aa11.82□□□□□ -0.52
CHD3-211ENST00000481999 GGACTQ9BVM4 153 aa11.82□□□□□ -0.52
CHD3-211ENST00000481999 MS4A5Q9H3V2 200 aa11.82□□□□□ -0.52
CHD3-211ENST00000481999 NKX6-3A6NJ46 265 aa11.82□□□□□ -0.52
CHD3-211ENST00000481999 IFITM10A6NMD0 228 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms