RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 BMPR1BO00238 502 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 GPR31O00270 319 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 GABARAPO95166 117 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 CRYGCP07315 174 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 SMIM18P0DKX4 95 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 RPA2P15927 270 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 HIST1H1BP16401 226 aaKnown RBP13.46□□□□□ -0.25
COL9A3-212ENST00000481800 F2RP25116 425 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 RCVRNP35243 200 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 GPR107Q5VW38 600 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 LPCAT3Q6P1A2 487 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 IL34Q6ZMJ4 242 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 C19orf35Q6ZS72 473 aa13.46□□□□□ -0.25
COL9A3-212ENST00000481800 NAA50Q9GZZ1 169 aaKnown RBP13.46□□□□□ -0.25
COL9A3-212ENST00000481800 TRAV3A0A0B4J244 114 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 NDUFB8O95169 186 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 REG1AP05451 166 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 CSN3P07498 182 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 ZNF182P17025 639 aaPredicted RBP13.45□□□□□ -0.26
COL9A3-212ENST00000481800 CTRB1P17538 263 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 OR2B8PP59922 312 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 CTF1Q16619 201 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 CTRB2Q6GPI1 263 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 EEF1AKMT3Q96AZ1 226 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 DGCR14Q96DF8 476 aaKnown RBP13.45□□□□□ -0.26
COL9A3-212ENST00000481800 FANCD2OSQ96PS1 177 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 MRPS26Q9BYN8 205 aaKnown RBP13.45□□□□□ -0.26
COL9A3-212ENST00000481800 FXYD6Q9H0Q3 95 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 SIGLEC8Q9NYZ4 499 aa13.45□□□□□ -0.26
COL9A3-212ENST00000481800 MARCH11A6NNE9 402 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 PPP5D1E7EU14 171 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 GGCTO75223 188 aaKnown RBP13.44□□□□□ -0.26
COL9A3-212ENST00000481800 IGHV3-23P01764 117 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 FRMD6-AS1P0C7T7 363 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 LPAR6P43657 344 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 LCN12Q6JVE5 192 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 GPR141Q7Z602 305 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 SGPP2Q8IWX5 399 aa13.44□□□□□ -0.26
COL9A3-212ENST00000481800 SRSF8Q9BRL6 282 aaKnown RBP13.44□□□□□ -0.26
COL9A3-212ENST00000481800 CGB1A6NKQ9 187 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 SNAPC5O75971 98 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 KRASP01116 189 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 FGF2P09038 288 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 PHLDA2Q53GA4 152 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 CLEC19AQ6UXS0 136 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 SBSPONQ8IVN8 264 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 Q8N402 240 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 FCAMRQ8WWV6 532 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 QTRT1Q9BXR0 403 aaKnown RBP13.43□□□□□ -0.26
COL9A3-212ENST00000481800 EXTL2Q9UBQ6 330 aa13.43□□□□□ -0.26
COL9A3-212ENST00000481800 CYB5BO43169 146 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 OR2C1O95371 312 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 HLA-AP01891 365 aaKnown RBP13.42□□□□□ -0.26
COL9A3-212ENST00000481800 IFNA6P05013 189 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 TRAPPC2P0DI81 140 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 TRAPPC2BP0DI82 140 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 ARL3P36405 182 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 RNASE12Q5GAN4 147 aaKnown RBP13.42□□□□□ -0.26
COL9A3-212ENST00000481800 THOC7Q6I9Y2 204 aaKnown RBP13.42□□□□□ -0.26
COL9A3-212ENST00000481800 GTSCR1Q86UQ5 136 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 DYNLRB2Q8TF09 96 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 CXorf58Q96LI9 332 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 THYN1Q9P016 225 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 S4R3C0 116 aa13.42□□□□□ -0.26
COL9A3-212ENST00000481800 DNAH9Q9NYC9 4486 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 IGLV11-55A0A075B6I3 123 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 TRBV7-1A0A0A6YYK4 115 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 IGLC7A0M8Q6 106 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 IGHV4-30-4P0DP06 118 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 G6PCP35575 357 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 KLK9Q2XQG4 91 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 FAM106AQ4KMX7 169 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 HSD17B13Q7Z5P4 300 aaPredicted RBP13.41□□□□□ -0.26
COL9A3-212ENST00000481800 SLC38A6Q8IZM9 456 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 Q8N1Y9 231 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 OR1L8Q8NGR8 309 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 OR2K2Q8NGT1 345 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 C15orf40Q8WUR7 153 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 HINT2Q9BX68 163 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 KLK9Q9UKQ9 250 aa13.41□□□□□ -0.26
COL9A3-212ENST00000481800 TEX50A0A1B0GTY4 177 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 M0QYG6 137 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 OR13C7P0DN81 318 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 UCP3P55916 312 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 ZNF585BQ52M93 769 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 RNASE10Q5GAN6 216 aaKnown RBP13.4□□□□□ -0.26
COL9A3-212ENST00000481800 TBC1D26Q86UD7 250 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 GPHB5Q86YW7 130 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 OR10W1Q8NGF6 305 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 CCDC140Q96MF4 163 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 TSC22D3Q99576 134 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 ZMAT4Q9H898 229 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 KLK11Q9UBX7 282 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 PRNDQ9UKY0 176 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 NSG2Q9Y328 171 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 OR51B2Q9Y5P1 312 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 DMRT1Q9Y5R6 373 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 TNCP24821 2201 aa13.4□□□□□ -0.26
COL9A3-212ENST00000481800 ZNF320A2RRD8 509 aa13.39□□□□□ -0.27
COL9A3-212ENST00000481800 LGALS9O00182 355 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms