RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TOMM40O96008 361 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 MT-ND6P03923 174 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 SCCPDHQ8NBX0 429 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 FCGR3BO75015 233 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 EFNB3Q15768 340 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 PHF7Q9BWX1 381 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 CLCF1Q9UBD9 225 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 CDC42EP3Q9UKI2 254 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 APCSP02743 223 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 PSG5Q15238 335 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 ZNF439Q8NDP4 499 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 OR4A16Q8NH70 328 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 POM121L2Q96KW2 1035 aa15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 SSBP3Q9BWW4 388 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 MBNL3Q9NUK0 354 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-207ENST00000479965 MT-CO2P00403 227 aa15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 TIGITQ495A1 244 aa15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 KNTC1P50748 2209 aa15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 IGHV2-70DA0A0C4DH43 119 aa15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 USF1P22415 310 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 SSTR5P35346 364 aa15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 TAAR6Q96RI8 345 aa15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 MRPS16Q9Y3D3 137 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-207ENST00000479965 M0R2Z0 102 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 MT-CO3P00414 261 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 IGLL1P15814 213 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 TNXAQ16473 311 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 TMEM249Q2WGJ8 235 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 WDR86Q86TI4 376 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 CHODLQ9H9P2 273 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 MPDU1O75352 247 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 RHOBP62745 196 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 RNASEKQ6P5S7 137 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 STPG3Q8N7X2 389 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 ZBTB34Q8NCN2 500 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 PKIBQ9C010 78 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 DNAJC13O75165 2243 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 TRGV10A0A0A0MS01 117 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 IGHV2-26A0A0B4J1V2 119 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 MMP23AO75900 390 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 C19orf35Q6ZS72 473 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 GCNT2Q8N0V5 402 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 ZNF596Q8TC21 504 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 RTL8AQ9BWD3 113 aa15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 ZNF331Q9NQX6 463 aaPredicted RBP15.59■□□□□ 0.09
CCDC88B-207ENST00000479965 KIAA1549Q9HCM3 1950 aa15.58■□□□□ 0.09
CCDC88B-207ENST00000479965 TMEM30CPA0ZSE6 113 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 AMY1AP04745 511 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 CLDN18P56856 261 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 SLAQ13239 276 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 SSPNQ14714 243 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 MIR17HGQ75NE6 70 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 HINT2Q9BX68 163 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 C9JCJ5 164 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 WNT9BO14905 357 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 HAND1O96004 215 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 PMCHL1Q16048 86 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 IBA57Q5T440 356 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 WASHC3Q9Y3C0 194 aa15.58■□□□□ 0.08
CCDC88B-207ENST00000479965 OR10J4P0C629 311 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 MPV17L2Q567V2 206 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 SLC24A4Q8NFF2 622 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 SH2D2AQ9NP31 389 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 TRAV9-2A0A087WT02 112 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 IGHV1-69-2A0A0G2JMI3 117 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 OR7C2O60412 319 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 HLA-DQA1P01909 254 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 GPR6P46095 362 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 AARDQ4LEZ3 155 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 FAM216AQ8WUB2 273 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 PLEKHA3Q9HB20 300 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 POLDIP2Q9Y2S7 368 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 SAA2-SAA4A0A096LPE2 208 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 IGLC7A0M8Q6 106 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 PSG1P11464 419 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 VHLLQ6RSH7 139 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 ZNF826PQ6ZT77 177 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 OR2D3Q8NGH3 330 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 HSD17B10Q99714 261 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 C12orf49Q9H741 205 aa15.57■□□□□ 0.08
CCDC88B-207ENST00000479965 TRAV3A0A0B4J244 114 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 EBLN2Q6P2I7 272 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 C18orf32Q8TCD1 76 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 LOC102723996A0A087X1L8 192 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 PINLYPA6NC86 204 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 OR4A47Q6IF82 309 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 NPVFQ9HCQ7 196 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 ARL2-SNX15V9GYD0 113 aa15.56■□□□□ 0.08
CCDC88B-207ENST00000479965 ALKBH6Q3KRA9 238 aa15.55■□□□□ 0.08
CCDC88B-207ENST00000479965 FAM122AQ96E09 287 aa15.55■□□□□ 0.08
CCDC88B-207ENST00000479965 CLEC5AQ9NY25 188 aa15.55■□□□□ 0.08
CCDC88B-207ENST00000479965 RPL8P62917 257 aaKnown RBP15.55■□□□□ 0.08
CCDC88B-207ENST00000479965 MORN2Q502X0 79 aa15.55■□□□□ 0.08
CCDC88B-207ENST00000479965 DCTN5Q9BTE1 182 aa15.55■□□□□ 0.08
CCDC88B-207ENST00000479965 PRRC2CQ9Y520 2896 aaKnown RBP15.55■□□□□ 0.08
CCDC88B-207ENST00000479965 FAM181BA6NEQ2 426 aa15.54■□□□□ 0.08
CCDC88B-207ENST00000479965 AHRRA9YTQ3 701 aa15.54■□□□□ 0.08
CCDC88B-207ENST00000479965 KLF7O75840 302 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-207ENST00000479965 ARR3P36575 388 aa15.54■□□□□ 0.08
CCDC88B-207ENST00000479965 LTBRP36941 435 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms