RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PDCD10Q9BUL8 212 aa5.33□□□□□ -1.56
USP48-208ENST00000479177 CHIAQ9BZP6 476 aa5.33□□□□□ -1.56
USP48-208ENST00000479177 ITGB1BP2Q9UKP3 347 aa5.33□□□□□ -1.56
USP48-208ENST00000479177 HILPDAQ9Y5L2 63 aa5.33□□□□□ -1.56
USP48-208ENST00000479177 MMP24Q9Y5R2 645 aa5.33□□□□□ -1.56
USP48-208ENST00000479177 TET2Q6N021 2002 aaPredicted RBP5.32□□□□□ -1.56
USP48-208ENST00000479177 TRAV14DV4A0A0A6YYC5 116 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 A0A0U1RQK1 487 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 A0A1B0GU03 582 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 C13orf42A0A1B0GVH6 325 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 FAM90A9PA6NNJ1 464 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 SRRM4A7MD48 611 aaKnown RBP5.32□□□□□ -1.56
USP48-208ENST00000479177 SMLR1H3BR10 107 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 BOLA2-SMG1P6H3BVE0 249 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 H7C2Y5 167 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 CD5LO43866 347 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 HRASP01112 189 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 KRASP01116 189 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 IGLV2-23P01705 113 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 SAA1P0DJI8 122 aaPredicted RBP5.32□□□□□ -1.56
USP48-208ENST00000479177 SLC25A6P12236 298 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 PAX6P26367 422 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 CD1BP29016 333 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 SMCO1Q147U7 214 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 THOC7Q6I9Y2 204 aaKnown RBP5.32□□□□□ -1.56
USP48-208ENST00000479177 VKORC1L1Q8N0U8 176 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 OR4D5Q8NGN0 318 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 OR4C13Q8NGP0 309 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 OR2T35Q8NGX2 323 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 ZNF503Q96F45 646 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 RRNAD1Q96FB5 475 aaKnown RBP5.32□□□□□ -1.56
USP48-208ENST00000479177 NMES1Q9C002 83 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 RANBP3Q9H6Z4 567 aaPredicted RBP5.32□□□□□ -1.56
USP48-208ENST00000479177 TMEM140Q9NV12 185 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 CACNG5Q9UF02 275 aa5.32□□□□□ -1.56
USP48-208ENST00000479177 SETD2Q9BYW2 2564 aaPredicted RBP5.32□□□□□ -1.56
USP48-208ENST00000479177 HOXA3O43365 443 aaPredicted RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 PITX3O75364 302 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 SPDEFO95238 335 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 IGKV1D-33P01593 117 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 IGKV1-33P01594 117 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 C1QBP02746 253 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 SNRNP70P08621 437 aaKnown RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 IL6RP08887 468 aaPredicted RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 OR9G9P0C7N8 305 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 ARHGDIBP52566 201 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 BPIFB3P59826 476 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 UBE2KP61086 200 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 RPS16P62249 146 aaKnown RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 CYCSP99999 105 aaKnown RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 EBI3Q14213 229 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 AARDQ4LEZ3 155 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 Q5BKY6 102 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 OR4A47Q6IF82 309 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 C9orf139Q6ZV77 190 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 SSX9Q7RTT3 188 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 H2BFWTQ7Z2G1 175 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 FOXRED2Q8IWF2 684 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 PUSL1Q8N0Z8 303 aaKnown RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 Q8N6K4 173 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 DMBX1Q8NFW5 382 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 PPP1R1CQ8WVI7 109 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 PPP1R14BQ96C90 147 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 FLYWCH2Q96CP2 140 aaKnown RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 RITA1Q96K30 269 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 RNF5Q99942 180 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 MS4A7Q9GZW8 240 aaPredicted RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 COA4Q9NYJ1 87 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 BET1LQ9NYM9 111 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 GSKIPQ9P0R6 139 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 RCL1Q9Y2P8 373 aaKnown RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 SOX21Q9Y651 276 aaPredicted RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 FN1P02751 2386 aaKnown RBP5.31□□□□□ -1.56
USP48-208ENST00000479177 NF1P21359 2839 aa5.31□□□□□ -1.56
USP48-208ENST00000479177 TRAV3A0A0B4J244 114 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 KRTAP23-1A1A580 65 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 C15orf61A6NNL5 157 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 CYSRT1A8MQ03 144 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 FAM90A26D6RGX4 464 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 K7EPK0 472 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 UPK2O00526 184 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 SLC25A17O43808 307 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 KBTBD11O94819 623 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 NDUFA3O95167 84 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 MPC2O95563 127 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 SCGB1D2O95969 90 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 MOSP00540 346 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 MBPP02686 304 aaPredicted RBP5.3□□□□□ -1.56
USP48-208ENST00000479177 CRYGBP07316 175 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 FBP1P09467 338 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 CNTFRP26992 372 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 PSMB6P28072 239 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 BRS3P32247 399 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 NKX2-1P43699 371 aaPredicted RBP5.3□□□□□ -1.56
USP48-208ENST00000479177 LGALS7P47929 136 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 DYNLT3P51808 116 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 OR2B8PP59922 312 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 S100A10P60903 97 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 FOXE3Q13461 319 aa5.3□□□□□ -1.56
USP48-208ENST00000479177 RAB32Q13637 225 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms