RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TMEM203Q969S6 136 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 FAM3DQ96BQ1 224 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 APLNQ9ULZ1 77 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 MRPS7Q9Y2R9 242 aaKnown RBP12.63□□□□□ -0.39
VIM-204ENST00000478746 KCNK7Q9Y2U2 307 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 OR4C46A6NHA9 309 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 MPTX1A8MV57 137 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 REG1AP05451 166 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 GPR183P32249 361 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 RANBP1P43487 201 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 CLDN12P56749 244 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 TBCEQ15813 527 aaPredicted RBP12.62□□□□□ -0.39
VIM-204ENST00000478746 C2orf76Q3KRA6 126 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 KCTD9Q7L273 389 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 H1FOOQ8IZA3 346 aaPredicted RBP12.62□□□□□ -0.39
VIM-204ENST00000478746 OR11H2Q8NH07 326 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 RAB3CQ96E17 227 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 CENPOQ9BU64 300 aa12.62□□□□□ -0.39
VIM-204ENST00000478746 ZNF436Q9C0F3 470 aaPredicted RBP12.62□□□□□ -0.39
VIM-204ENST00000478746 C11orf68Q9H3H3 251 aaKnown RBP12.62□□□□□ -0.39
VIM-204ENST00000478746 LSM2Q9Y333 95 aaKnown RBP12.62□□□□□ -0.39
VIM-204ENST00000478746 IGLV11-55A0A075B6I3 123 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 A0A1B0GVY2 172 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 RPA2P15927 270 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 RPL30P62888 115 aaKnown RBP12.61□□□□□ -0.39
VIM-204ENST00000478746 LIPKQ5VXJ0 399 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 APRG1Q8IVJ8 170 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 SPARTQ8N0X7 666 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 PUSL1Q8N0Z8 303 aaKnown RBP12.61□□□□□ -0.39
VIM-204ENST00000478746 ZNF645Q8N7E2 425 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 GVQW1Q8N7I0 195 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 ZNF502Q8TBZ5 544 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 CD300LFQ8TDQ1 290 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 UFD1Q92890 307 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 DNAH2Q9P225 4427 aa12.61□□□□□ -0.39
VIM-204ENST00000478746 DNAH17Q9UFH2 4485 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 A0A087WXM4 84 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 RAB27BO00194 218 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 ARL6IP5O75915 188 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 MFAP2P55001 183 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 TMEM91Q6ZNR0 172 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 ZNF367Q7RTV3 350 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 TSPAN14Q8NG11 270 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 ACOT13Q9NPJ3 140 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 DAZ1Q9NQZ3 744 aaKnown RBP12.6□□□□□ -0.39
VIM-204ENST00000478746 RAB22AQ9UL26 194 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 ABCA13Q86UQ4 5058 aa12.6□□□□□ -0.39
VIM-204ENST00000478746 TMEM272A0A1B0GTI8 110 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 DEFB4AO15263 64 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 HSMCR30P0CW71 290 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 GNB3P16520 340 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 CD36P16671 472 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 OR4S2Q8NH73 311 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 OR4A5Q8NH83 315 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 TMEM190Q8WZ59 177 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 FCGR1BQ92637 280 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 VCX3AQ9NNX9 186 aa12.59□□□□□ -0.39
VIM-204ENST00000478746 RBMX2Q9Y388 322 aaKnown RBP12.59□□□□□ -0.39
VIM-204ENST00000478746 C11orf94C9JXX5 98 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 SLC22A5O76082 557 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 CTSDP07339 412 aaPredicted RBP12.58□□□□□ -0.4
VIM-204ENST00000478746 GADD45AP24522 165 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 PTBP1P26599 531 aaKnown RBP eCLIP12.58□□□□□ -0.4
VIM-204ENST00000478746 ADMP35318 185 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 TALDO1P37837 337 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 CMC4P56277 68 aaPredicted RBP12.58□□□□□ -0.4
VIM-204ENST00000478746 RPL8P62917 257 aaKnown RBP12.58□□□□□ -0.4
VIM-204ENST00000478746 PLA2G7Q13093 441 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 TRAM1Q15629 374 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 SSX1Q16384 188 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 SSX9Q7RTT3 188 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 MGLLQ99685 303 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 THYN1Q9P016 225 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 V9GY05 133 aa12.58□□□□□ -0.4
VIM-204ENST00000478746 DYNC1H1Q14204 4646 aaKnown RBP12.58□□□□□ -0.4
VIM-204ENST00000478746 A0A075B6Q4 140 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 TGOLN2O43493 480 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 HRASP01112 189 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 HLA-GP17693 338 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 CALRP27797 417 aaKnown RBP12.57□□□□□ -0.4
VIM-204ENST00000478746 RPS25P62851 125 aaKnown RBP12.57□□□□□ -0.4
VIM-204ENST00000478746 MLLT11Q13015 90 aaPredicted RBP12.57□□□□□ -0.4
VIM-204ENST00000478746 ZNF124Q15973 351 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 HES5Q5TA89 166 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 UBE2UQ5VVX9 321 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 Q6ZS49 121 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 OR10R2Q8NGX6 335 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 TCTEX1D2Q8WW35 142 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 OR2W1Q9Y3N9 320 aa12.57□□□□□ -0.4
VIM-204ENST00000478746 IGKV1D-8A0A087WSZ0 117 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 OR2T8A6NH00 312 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 PRSS29PA6NIE9 313 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 CGB1A6NKQ9 187 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 MFNGO00587 321 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 HLA-DQB1P01920 261 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 PSMA1P25786 263 aaKnown RBP12.56□□□□□ -0.4
VIM-204ENST00000478746 PSMB9P28065 219 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 NEDD8Q15843 81 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 HSD17B10Q99714 261 aaKnown RBP12.56□□□□□ -0.4
VIM-204ENST00000478746 C20orf24Q9BUV8 137 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms