RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 J3QRK9 145 aa13.38□□□□□ -0.27
SHH-205ENST00000472308 PTBP1P26599 531 aaKnown RBP eCLIP13.38□□□□□ -0.27
SHH-205ENST00000472308 LAIR2Q6ISS4 152 aa13.38□□□□□ -0.27
SHH-205ENST00000472308 MRPS7Q9Y2R9 242 aaKnown RBP13.38□□□□□ -0.27
SHH-205ENST00000472308 PRELID3BQ9Y3B1 194 aa13.38□□□□□ -0.27
SHH-205ENST00000472308 IGLC7A0M8Q6 106 aa13.37□□□□□ -0.27
SHH-205ENST00000472308 ZNF207O43670 478 aaKnown RBP13.37□□□□□ -0.27
SHH-205ENST00000472308 CA1P00915 261 aaPredicted RBP13.37□□□□□ -0.27
SHH-205ENST00000472308 RPL8P62917 257 aaKnown RBP13.37□□□□□ -0.27
SHH-205ENST00000472308 MRPS15P82914 257 aaKnown RBP13.37□□□□□ -0.27
SHH-205ENST00000472308 EIF4EBP1Q13541 118 aaPredicted RBP13.37□□□□□ -0.27
SHH-205ENST00000472308 RAB11BQ15907 218 aa13.37□□□□□ -0.27
SHH-205ENST00000472308 Q6ZTC4 211 aa13.37□□□□□ -0.27
SHH-205ENST00000472308 OR4S2Q8NH73 311 aa13.37□□□□□ -0.27
SHH-205ENST00000472308 RBMX2Q9Y388 322 aaKnown RBP13.37□□□□□ -0.27
SHH-205ENST00000472308 APOBP04114 4563 aaKnown RBP13.36□□□□□ -0.27
SHH-205ENST00000472308 OR2T8A6NH00 312 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 M0R2N4 97 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 RAB27BO00194 218 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 MFNGO00587 321 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 ATP5HO75947 161 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 RBMY1A1P0DJD3 496 aaKnown RBP13.36□□□□□ -0.27
SHH-205ENST00000472308 RBMY1CP0DJD4 496 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 HLA-GP17693 338 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 CRHBPP24387 322 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 HLA-DMBP28068 263 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 RBMY1FQ15415 496 aaKnown RBP13.36□□□□□ -0.27
SHH-205ENST00000472308 AHSA2Q719I0 299 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 RAB3CQ96E17 227 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 ZNF414Q96IQ9 312 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 RNF2Q99496 336 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 CHRDL1Q9BU40 450 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 AK6Q9Y3D8 172 aaKnown RBP13.36□□□□□ -0.27
SHH-205ENST00000472308 ETV7Q9Y603 341 aa13.36□□□□□ -0.27
SHH-205ENST00000472308 DENRO43583 198 aaKnown RBP13.35□□□□□ -0.27
SHH-205ENST00000472308 GNB3P16520 340 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 OR2B8PP59922 312 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 TMEM187Q14656 261 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 C2orf76Q3KRA6 126 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 Q6ZS49 121 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 FAM3DQ96BQ1 224 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 C20orf24Q9BUV8 137 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 PSORS1C1Q9UIG5 152 aa13.35□□□□□ -0.27
SHH-205ENST00000472308 IGKV1D-13A0A0B4J2D9 117 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 TMEM272A0A1B0GTI8 110 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 F8W735 103 aaPredicted RBP13.34□□□□□ -0.27
SHH-205ENST00000472308 K7EMT4 169 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 NDUFA4O00483 81 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 IGKV1-13P0DP09 117 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 CD36P16671 472 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 TFPI2P48307 235 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 PVRIGQ6DKI7 326 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 PQLC1Q8N2U9 271 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 POM121L12Q8N7R1 296 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 VN1R17PQ8TDU5 208 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 TCTEX1D2Q8WW35 142 aa13.34□□□□□ -0.27
SHH-205ENST00000472308 TRAV10A0A0B4J240 114 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 IGHV4-28A0A0C4DH34 117 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 HLA-DQB1P01920 261 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 CYGBQ8WWM9 190 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 BSCL2Q96G97 398 aaPredicted RBP13.33□□□□□ -0.28
SHH-205ENST00000472308 GPHA2Q96T91 129 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 RNF126Q9BV68 326 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 SMPXQ9UHP9 88 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 SPATA2Q9UM82 520 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 OR2W1Q9Y3N9 320 aa13.33□□□□□ -0.28
SHH-205ENST00000472308 A0A075B6Q4 140 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 C15orf61A6NNL5 157 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 AMBPP02760 352 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 HIST1H1DP16402 221 aaKnown RBP13.32□□□□□ -0.28
SHH-205ENST00000472308 NFYAP23511 347 aaPredicted RBP13.32□□□□□ -0.28
SHH-205ENST00000472308 TIMM50Q3ZCQ8 353 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 TMEM91Q6ZNR0 172 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 NR2C2APQ86WQ0 139 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 OR10R2Q8NGX6 335 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 HSD17B10Q99714 261 aaKnown RBP13.32□□□□□ -0.28
SHH-205ENST00000472308 FKBP14Q9NWM8 211 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 BET1LQ9NYM9 111 aa13.32□□□□□ -0.28
SHH-205ENST00000472308 ELF5Q9UKW6 265 aaPredicted RBP13.32□□□□□ -0.28
SHH-205ENST00000472308 LSM2Q9Y333 95 aaKnown RBP13.32□□□□□ -0.28
SHH-205ENST00000472308 IGKV3-7A0A075B6H7 116 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 TRAV3A0A0B4J244 114 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 C15orf62A8K5M9 175 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 CHEK1O14757 476 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 GIG44P09565 113 aaPredicted RBP13.31□□□□□ -0.28
SHH-205ENST00000472308 LGALS9BQ3B8N2 356 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 SPSB3Q6PJ21 355 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 TMEM203Q969S6 136 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 S100A14Q9HCY8 104 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 TAS2R8Q9NYW2 309 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 THYN1Q9P016 225 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 RAB22AQ9UL26 194 aa13.31□□□□□ -0.28
SHH-205ENST00000472308 ELOA3CA0A087WX78 387 aaPredicted RBP13.3□□□□□ -0.28
SHH-205ENST00000472308 IGHV3-21A0A0B4J1V1 117 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 IGHV7-4-1A0A0J9YVY3 117 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 MRPS14O60783 128 aaKnown RBP13.3□□□□□ -0.28
SHH-205ENST00000472308 HRASP01112 189 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 CMC4P56277 68 aaPredicted RBP13.3□□□□□ -0.28
SHH-205ENST00000472308 SSX1Q16384 188 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 FAM90A2PQ658T7 463 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms