RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 C4orf17Q53FE4 359 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 TMEM108Q6UXF1 575 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-217ENST00000466159 FRZBQ92765 325 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 TCEAL7Q9BRU2 100 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 GGTLC1Q9BX51 225 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 CTDSP1Q9GZU7 261 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 RAB9BQ9NP90 201 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 TP53TG5Q9Y2B4 290 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 MUC6Q6W4X9 2439 aa7.34□□□□□ -1.23
SYNE1-217ENST00000466159 TRBV24-1A0A075B6N3 115 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 ZNF729A6NN14 1252 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-217ENST00000466159 C16orf97H3BN30 126 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 MKRN2OSH3BPM6 223 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 PRRG2O14669 202 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 MPDU1O75352 247 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 IGKV1-16P04430 117 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 OR4A8P0C604 315 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 TRGC1P0CF51 173 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 NDUFB7P17568 137 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 OPRK1P41145 380 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 CDX1P47902 265 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-217ENST00000466159 ATP5G3P48201 142 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 HSPE1P61604 102 aaKnown RBP7.33□□□□□ -1.24
SYNE1-217ENST00000466159 ADIPOQQ15848 244 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 ARSJQ5FYB0 599 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-217ENST00000466159 GFI1BQ5VTD9 330 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 NUP37Q8NFH4 326 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 SSMEM1Q8WWF3 244 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 NEIL1Q96FI4 390 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-217ENST00000466159 GGACTQ9BVM4 153 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 HINT2Q9BX68 163 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 TMEM14BQ9NUH8 114 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 PXMP4Q9Y6I8 212 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 TRGV8A0A0C4DH27 118 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 CT45A6P0DMU7 189 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 CT45A5P0DMU8 189 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 CT45A7P0DMV0 189 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 TDGF1P3P51864 188 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 BSPH1Q075Z2 132 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 CLEC12BQ2HXU8 276 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 TEX36Q5VZQ5 186 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 CST9LP1Q5W188 147 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 OR5T1Q8NG75 326 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 OR13D1Q8NGV5 346 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 OR51M1Q9H341 326 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 FOXA2Q9Y261 457 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-217ENST00000466159 ARFGEF3Q5TH69 2177 aa7.33□□□□□ -1.24
SYNE1-217ENST00000466159 SRRM4A7MD48 611 aaKnown RBP7.32□□□□□ -1.24
SYNE1-217ENST00000466159 CA2P00918 260 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 THBDP07204 575 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 PFN1P07737 140 aaKnown RBP7.32□□□□□ -1.24
SYNE1-217ENST00000466159 PDZD11Q5EBL8 140 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 SLC25A48Q6ZT89 311 aaKnown RBP7.32□□□□□ -1.24
SYNE1-217ENST00000466159 Q8NA96 180 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 SLC24A4Q8NFF2 622 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 RND1Q92730 232 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 CORO2AQ92828 525 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 RAB1CQ92928 201 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 ELOVL1Q9BW60 279 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 LINC00574Q9H8X3 128 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 NPVFQ9HCQ7 196 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 AURKAIP1Q9NWT8 199 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-217ENST00000466159 RPUSD1Q9UJJ7 312 aaKnown RBP7.32□□□□□ -1.24
SYNE1-217ENST00000466159 LSM4Q9Y4Z0 139 aaKnown RBP7.32□□□□□ -1.24
SYNE1-217ENST00000466159 OR51B2Q9Y5P1 312 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 C17orf100A8MU93 164 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 PHOX2AO14813 284 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 FCN3O75636 299 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 SOD3P08294 240 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 ARL14EPLP0DKL9 152 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 NPY1RP25929 384 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 GNB1P62873 340 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 ADTRPQ96IZ2 230 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 TMEM204Q9BSN7 226 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 DERL1Q9BUN8 251 aa7.32□□□□□ -1.24
SYNE1-217ENST00000466159 hADV38S2A0JD32 116 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 H7BYZ3 331 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 GATCO43716 136 aaKnown RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 NDUFB4O95168 129 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 HRASP01112 189 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 CCL3L1P16619 93 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 TNFRSF1AP19438 455 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 GALR1P47211 349 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 FAM122AQ96E09 287 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 ENY2Q9NPA8 101 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 SLC35D1Q9NTN3 355 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 SLC25A10Q9UBX3 287 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 J3QR06 171 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 IGHV2-70P01814 119 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 IL6RP08887 468 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 STAG3L2P0CL84 134 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 STAG3L3P0CL85 134 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 S100PP25815 95 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 RPL31P62899 125 aaKnown RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 POU2AF1Q16633 256 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 TMEM249Q2WGJ8 235 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 SPATA31B1PQ5VZV4 182 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 TEPPQ6URK8 271 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 GFRALQ6UXV0 394 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms