RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CCL28Q9NRJ3 127 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 RHBDL2Q9NX52 303 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 HRASP01112 189 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 DEFA4P12838 97 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 HIST1H1BP16401 226 aaKnown RBP12.04□□□□□ -0.48
COL7A1-204ENST00000462475 FCGR2CP31995 323 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 GABARAPL2P60520 117 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 FAM106AQ4KMX7 169 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 TM4SF20Q53R12 229 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 GVQW1Q8N7I0 195 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 BEST4Q8NFU0 473 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 OR52B4Q8NGK2 314 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 OR13F1Q8NGS4 319 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 GGTLC1Q9BX51 225 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 BET1LQ9NYM9 111 aa12.04□□□□□ -0.48
COL7A1-204ENST00000462475 TRAV3A0A0B4J244 114 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 CLEC3BP05452 202 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 GPR183P32249 361 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 OR2B8PP59922 312 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 ARPC4P59998 168 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 SPAG16Q8N0X2 631 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 OR4A5Q8NH83 315 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 SLC25A38Q96DW6 304 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 OVOL2Q9BRP0 275 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 HRASLSQ9HDD0 168 aa12.03□□□□□ -0.48
COL7A1-204ENST00000462475 TRBV7-1A0A0A6YYK4 115 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 IGHV3-35A0A0C4DH35 117 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 IGLC7A0M8Q6 106 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 SULT1C2O00338 296 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 PPYP01298 95 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 FCER2P06734 321 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 CLEC2LP0C7M8 214 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 MSMO1Q15800 293 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 ZNF773Q6PK81 442 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 TPRA1Q86W33 373 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 SPARTQ8N0X7 666 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 OR5H6Q8NGV6 325 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 ZNF502Q8TBZ5 544 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 CXorf58Q96LI9 332 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 RAB26Q9ULW5 256 aa12.02□□□□□ -0.49
COL7A1-204ENST00000462475 TRAV18A0A075B6X5 111 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 LOC102724200A0A096LPH7 203 aaPredicted RBP12.01□□□□□ -0.49
COL7A1-204ENST00000462475 RBFOX2O43251 390 aaKnown RBP eCLIP12.01□□□□□ -0.49
COL7A1-204ENST00000462475 MRPS14O60783 128 aaKnown RBP12.01□□□□□ -0.49
COL7A1-204ENST00000462475 C8orf88P0DMB2 117 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 SDC2P34741 201 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 FXYD4P59646 89 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 MXD1Q05195 221 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 HOGA1Q86XE5 327 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 SLC5A7Q9GZV3 580 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 Q9H521 79 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 RNF167Q9H6Y7 350 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 SSR3Q9UNL2 185 aa12.01□□□□□ -0.49
COL7A1-204ENST00000462475 UPK2O00526 184 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 TAS2R31P59538 309 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 POU2AF1Q16633 256 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 ANKRD55Q3KP44 614 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 ZNF585BQ52M93 769 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 ZBTB34Q8NCN2 500 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 OR1L6Q8NGR2 347 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 MARC2Q969Z3 335 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 KMT2AQ03164 3969 aa12□□□□□ -0.49
COL7A1-204ENST00000462475 FRAS1Q86XX4 4008 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 TRAV25A0A0B4J276 109 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 S1PR2O95136 353 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 HPRT1P00492 218 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 RPA2P15927 270 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 NQO2P16083 231 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 EWSR1Q01844 656 aaKnown RBP eCLIP11.99□□□□□ -0.49
COL7A1-204ENST00000462475 CATR1Q13166 79 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 PMS2P11Q13670 270 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 PLET1Q6UQ28 207 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 ZNF818PQ6ZRF7 136 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 RBPMS2Q6ZRY4 209 aaKnown RBP11.99□□□□□ -0.49
COL7A1-204ENST00000462475 TMEM17Q86X19 198 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 OR10W1Q8NGF6 305 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 OR51H1Q8NH63 302 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 LINC00476Q8WZB0 136 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 FCGR1BQ92637 280 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 AIFM2Q9BRQ8 373 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 QTRT1Q9BXR0 403 aaKnown RBP11.99□□□□□ -0.49
COL7A1-204ENST00000462475 ZNF436Q9C0F3 470 aaPredicted RBP11.99□□□□□ -0.49
COL7A1-204ENST00000462475 COMMD5Q9GZQ3 224 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 TMEM140Q9NV12 185 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 MRPL27Q9P0M9 148 aaKnown RBP11.99□□□□□ -0.49
COL7A1-204ENST00000462475 UFC1Q9Y3C8 167 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 ETV7Q9Y603 341 aa11.99□□□□□ -0.49
COL7A1-204ENST00000462475 PTBP1P26599 531 aaKnown RBP eCLIP11.98□□□□□ -0.49
COL7A1-204ENST00000462475 IDNKQ5T6J7 187 aa11.98□□□□□ -0.49
COL7A1-204ENST00000462475 TMEM190Q8WZ59 177 aa11.98□□□□□ -0.49
COL7A1-204ENST00000462475 SRSF8Q9BRL6 282 aaKnown RBP11.98□□□□□ -0.49
COL7A1-204ENST00000462475 AUNIPQ9H7T9 357 aa11.98□□□□□ -0.49
COL7A1-204ENST00000462475 UBQLN2Q9UHD9 624 aa11.98□□□□□ -0.49
COL7A1-204ENST00000462475 A0A0J9YWU9 116 aa11.97□□□□□ -0.49
COL7A1-204ENST00000462475 CXorf65A6NEN9 183 aa11.97□□□□□ -0.49
COL7A1-204ENST00000462475 TGOLN2O43493 480 aa11.97□□□□□ -0.49
COL7A1-204ENST00000462475 ELLP55199 621 aaPredicted RBP11.97□□□□□ -0.49
COL7A1-204ENST00000462475 SCAND1P57086 179 aa11.97□□□□□ -0.49
COL7A1-204ENST00000462475 WT1-ASQ06250 92 aa11.97□□□□□ -0.49
COL7A1-204ENST00000462475 AADACL3Q5VUY0 350 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms