RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 FXYD3Q14802 87 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 TRIM16LQ309B1 348 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 ZNF585BQ52M93 769 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 OR4A47Q6IF82 309 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 TEX38Q6PEX7 206 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 HSD17B13Q7Z5P4 300 aaPredicted RBP6.86□□□□□ -1.31
COL28A1-205ENST00000453441 OR5M8Q8NGP6 311 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 WIPF2Q8TF74 440 aaPredicted RBP6.86□□□□□ -1.31
COL28A1-205ENST00000453441 GPHA2Q96T91 129 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 CITED1Q99966 193 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 HSPB9Q9BQS6 159 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 PALMDQ9NP74 551 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 PARP11Q9NR21 331 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 TMEM140Q9NV12 185 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 PRNDQ9UKY0 176 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 VSIG4Q9Y279 399 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 PLXNB1O43157 2135 aa6.86□□□□□ -1.31
COL28A1-205ENST00000453441 ANK2Q01484 3957 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 LINC00854A0A1B0GVQ3 168 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 SH2D7A6NKC9 451 aaPredicted RBP6.85□□□□□ -1.31
COL28A1-205ENST00000453441 UPK2O00526 184 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 ATP6V0E1O15342 81 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 PLA2G10O15496 165 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 BRI3O95415 125 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 CDS2O95674 445 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 KRASP01116 189 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 IGHG4P01861 327 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 OR5AC1P0C628 307 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 AKR1C4P17516 323 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 HLA-GP17693 338 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 BTCP35070 178 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 AKR1C2P52895 323 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 FOXE3Q13461 319 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 TNXAQ16473 311 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 H2BFWTQ7Z2G1 175 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 TMED4Q7Z7H5 227 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 SLC25A42Q86VD7 318 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 ZNF695Q8IW36 515 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 RNF152Q8N8N0 203 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 OR5B3Q8NH48 314 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 ABHD5Q8WTS1 349 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 GLYATL2Q8WU03 294 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 RBPMSQ93062 196 aaKnown RBP6.85□□□□□ -1.31
COL28A1-205ENST00000453441 RRNAD1Q96FB5 475 aaKnown RBP6.85□□□□□ -1.31
COL28A1-205ENST00000453441 SEC22AQ96IW7 307 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 TMEM56Q96MV1 263 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 TP53RKQ96S44 253 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 COMMD5Q9GZQ3 224 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 ALX4Q9H161 411 aaPredicted RBP6.85□□□□□ -1.31
COL28A1-205ENST00000453441 ZNF430Q9H8G1 570 aaPredicted RBP6.85□□□□□ -1.31
COL28A1-205ENST00000453441 ZFP57Q9NU63 452 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 FOXA2Q9Y261 457 aaPredicted RBP6.85□□□□□ -1.31
COL28A1-205ENST00000453441 NUBP2Q9Y5Y2 271 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 TMEM56-RWDD3S4R434 201 aa6.85□□□□□ -1.31
COL28A1-205ENST00000453441 FAM240BA0A1B0GVZ2 78 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 FCN1O00602 326 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 DHFRP00374 187 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 TCRBP04435 133 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 RPL27AP46776 148 aaKnown RBP6.84□□□□□ -1.31
COL28A1-205ENST00000453441 CCR6P51684 374 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 RAB25P57735 213 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 GNB1P62873 340 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 CFHR3Q02985 330 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 TMEM95Q3KNT9 176 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 C19orf54Q5BKX5 351 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 CXorf66Q5JRM2 361 aaPredicted RBP6.84□□□□□ -1.31
COL28A1-205ENST00000453441 UNQ5815/PRO19632Q6UWF5 114 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 SSX9Q7RTT3 188 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 ZNF429Q86V71 674 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 NDUFA11Q86Y39 141 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 VKORC1L1Q8N0U8 176 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 LGI3Q8N145 548 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 LRTM2Q8N967 370 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 MINDY2Q8NBR6 621 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 ADAD2Q8NCV1 583 aaKnown RBP6.84□□□□□ -1.31
COL28A1-205ENST00000453441 OR5AU1Q8NGC0 362 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 OR4A16Q8NH70 328 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 RNASE11Q8TAA1 199 aaKnown RBP6.84□□□□□ -1.31
COL28A1-205ENST00000453441 GRPEL2Q8TAA5 225 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 ENKURQ8TC29 256 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 SRSF12Q8WXF0 261 aaKnown RBP6.84□□□□□ -1.31
COL28A1-205ENST00000453441 LSM10Q969L4 123 aaKnown RBP6.84□□□□□ -1.31
COL28A1-205ENST00000453441 TMEM230Q96A57 120 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 CLCC1Q96S66 551 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 PHB2Q99623 299 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 C20orf85Q9H1P6 137 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 SLA2Q9H6Q3 261 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 TBC1D24Q9ULP9 559 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 ZNF257Q9Y2Q1 563 aa6.84□□□□□ -1.31
COL28A1-205ENST00000453441 TENM1Q9UKZ4 2725 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 A0A0B4J2A0 478 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 C15orf61A6NNL5 157 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 M0QZ24 198 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 ARPC1BO15143 372 aaKnown RBP6.83□□□□□ -1.32
COL28A1-205ENST00000453441 CYB5BO43169 146 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 SFT2D2O95562 160 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 IGKV1-39P01597 117 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 IGKV1D-39P04432 117 aa6.83□□□□□ -1.32
COL28A1-205ENST00000453441 PPIFP30405 207 aaKnown RBP6.83□□□□□ -1.32
COL28A1-205ENST00000453441 G6PCP35575 357 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms