RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 EFEMP2O95967 443 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 CDX1P47902 265 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-206ENST00000429895 PMCHL1Q16048 86 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 SLC25A34Q6PIV7 304 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 AQP10Q96PS8 301 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 TBL2Q9Y4P3 447 aaKnown RBP13.04□□□□□ -0.32
PTPRF-206ENST00000429895 A0A1W2PR77 199 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 LDLRAD4O15165 306 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 ZNF660Q6AZW8 331 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-206ENST00000429895 NEU4Q8WWR8 484 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-206ENST00000429895 PGPEP1Q9NXJ5 209 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 SIPA1L3O60292 1781 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-206ENST00000429895 GCM2O75603 506 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-206ENST00000429895 COLCA1Q6ZS62 124 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 C7orf66A4D0T2 115 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 GREM1O60565 184 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 FAM209AQ5JX71 171 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 ERASQ7Z444 233 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 SMIM10L1P0DMW3 83 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 FOXA3P55318 350 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-206ENST00000429895 NSUN5P1Q3KNT7 163 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 FAM57AQ8TBR7 257 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 SMIM10Q96HG1 83 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 FOCADQ5VW36 1801 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 EIF4EBP2Q13542 120 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-206ENST00000429895 C1QTNF12Q5T7M4 302 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 ZNF418Q8TF45 676 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-206ENST00000429895 QSER1Q2KHR3 1735 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 IGHMP01871 453 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 VDAC2P45880 294 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-206ENST00000429895 A0A0G2JLM5 398 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 NPIPB9F8W1W9 429 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 NPIPB7O75200 414 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 IGFBP2P18065 325 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 NPIPB4C9JG80 1138 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 SAPCD1Q5SSQ6 148 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 C1orf162Q8NEQ5 155 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-206ENST00000429895 MRPL20Q9BYC9 149 aaKnown RBP13.03□□□□□ -0.32
PTPRF-206ENST00000429895 EGR4Q05215 589 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 ZNF506Q5JVG8 444 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 C12orf54Q6X4T0 127 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 C2orf88Q9BSF0 95 aa13.03□□□□□ -0.32
PTPRF-206ENST00000429895 CHCHD2Q9Y6H1 151 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-206ENST00000429895 IGHV2OR16-5A0A0B4J2B6 119 aa13.02□□□□□ -0.32
PTPRF-206ENST00000429895 CELA3BP08861 270 aa13.02□□□□□ -0.32
PTPRF-206ENST00000429895 TMEM30BQ3MIR4 351 aa13.02□□□□□ -0.32
PTPRF-206ENST00000429895 H7C1H1 209 aa13.02□□□□□ -0.32
PTPRF-206ENST00000429895 CGAP01215 116 aa13.02□□□□□ -0.32
PTPRF-206ENST00000429895 PUSL1Q8N0Z8 303 aaKnown RBP13.02□□□□□ -0.32
PTPRF-206ENST00000429895 OR13A1Q8NGR1 328 aa13.02□□□□□ -0.32
PTPRF-206ENST00000429895 C12orf77C9JDV5 145 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 PAPPA-AS1Q5QFB9 102 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 MYO16Q9Y6X6 1858 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 ZNF815PA8K554 130 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 HBBP68871 147 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 TFF3Q07654 80 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 FAM71F2Q6NXP2 309 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 IFI27L2Q9H2X8 130 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 C21orf62Q9NYP8 219 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 K7ERU9 68 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 CD24P25063 80 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 IFITM3Q01628 133 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 LY6DQ14210 128 aa13.02□□□□□ -0.33
PTPRF-206ENST00000429895 TTC32Q5I0X7 151 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 CFAP161Q6P656 301 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 C19orf24Q9BVV8 132 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 COL18A1P39060 1754 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 IGHV1-2P23083 117 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 C1QL2Q7Z5L3 287 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 STHQ8IWL8 128 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 APCDD1LQ8NCL9 501 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 SELENOKQ9Y6D0 94 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 CEACAM1P13688 526 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 REC114Q7Z4M0 266 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 MALP21145 153 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 GDF15Q99988 308 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 UQCR10Q9UDW1 63 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 C17orf98A8MV24 154 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 KCNS1Q96KK3 526 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 PRELID3AQ96N28 172 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 PEMTQ9UBM1 199 aa13.01□□□□□ -0.33
PTPRF-206ENST00000429895 NBEAP1P0C6P0 100 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 CBLN1P23435 193 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 ARID1AO14497 2285 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 SNAI2O43623 268 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 NMBP08949 121 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 C3orf36Q3SXR2 165 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 CTHRC1Q96CG8 243 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 SCGB3A1Q96QR1 104 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 PEX7O00628 323 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 WNT10AQ9GZT5 417 aa13□□□□□ -0.33
PTPRF-206ENST00000429895 H2BFSP57053 126 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 NPCDR1Q9BY65 106 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 GATA2P23769 480 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-206ENST00000429895 C9orf106Q8NAJ2 232 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 WFDC12Q8WWY7 111 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 ZNF414Q96IQ9 312 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 OR11H12B2RN74 326 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 OR11H1Q8NG94 326 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 OR11H2Q8NH07 326 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms