RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 HIST1H1BP16401 226 aaKnown RBP10.9□□□□□ -0.66
SDC1-204ENST00000429035 CTRB1P17538 263 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 CATR1Q13166 79 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 EIF4EBP1Q13541 118 aaPredicted RBP10.9□□□□□ -0.66
SDC1-204ENST00000429035 UBE2UQ5VVX9 321 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 CTRB2Q6GPI1 263 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 OR4A47Q6IF82 309 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 TMEM17Q86X19 198 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 GPHB5Q86YW7 130 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 SPAG16Q8N0X2 631 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 UXS1Q8NBZ7 420 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 OR51H1Q8NH63 302 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 GGTLC1Q9BX51 225 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 SLC5A7Q9GZV3 580 aa10.9□□□□□ -0.66
SDC1-204ENST00000429035 BIRC6Q9NR09 4857 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 TRAV18A0A075B6X5 111 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 PPYP01298 95 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 CRYGCP07315 174 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 CLEC2LP0C7M8 214 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 RPA2P15927 270 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 SDC2P34741 201 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 PMS2P11Q13670 270 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 TM4SF20Q53R12 229 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 IDNKQ5T6J7 187 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 TPRA1Q86W33 373 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 OR5H6Q8NGV6 325 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 CXorf58Q96LI9 332 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 BET1LQ9NYM9 111 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 RAB26Q9ULW5 256 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 HYDINQ4G0P3 5121 aa10.89□□□□□ -0.67
SDC1-204ENST00000429035 IGLV11-55A0A075B6I3 123 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 LOC102724200A0A096LPH7 203 aaPredicted RBP10.88□□□□□ -0.67
SDC1-204ENST00000429035 TRBV7-1A0A0A6YYK4 115 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 LOC100506127A0A0U1RQW1 187 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 MEIS3P1A6NDR6 274 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 CGB1A6NKQ9 187 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 A8MWP6 167 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 FGF9P31371 208 aaPredicted RBP10.88□□□□□ -0.67
SDC1-204ENST00000429035 BRWD1-AS2P59051 145 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 ZNF585BQ52M93 769 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 AADACL3Q5VUY0 350 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 UNQ9165/PRO28630Q6UXU0 137 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 RBPMS2Q6ZRY4 209 aaKnown RBP10.88□□□□□ -0.67
SDC1-204ENST00000429035 SPARTQ8N0X7 666 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 DMBX1Q8NFW5 382 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 OR1L6Q8NGR2 347 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 OR4A5Q8NH83 315 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 FCGR1BQ92637 280 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 COMMD5Q9GZQ3 224 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 RNF167Q9H6Y7 350 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 UBQLN2Q9UHD9 624 aa10.88□□□□□ -0.67
SDC1-204ENST00000429035 TRAV3A0A0B4J244 114 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 MRPS14O60783 128 aaKnown RBP10.87□□□□□ -0.67
SDC1-204ENST00000429035 S1PR2O95136 353 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 CLEC3BP05452 202 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 HERV-K104P61576 105 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 ANKRD55Q3KP44 614 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 PLET1Q6UQ28 207 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 SLC25A38Q96DW6 304 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 AIFM2Q9BRQ8 373 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 IFT46Q9NQC8 304 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 TMEM140Q9NV12 185 aa10.87□□□□□ -0.67
SDC1-204ENST00000429035 CXorf65A6NEN9 183 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 NQO2P16083 231 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 TAS2R31P59538 309 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 OR2B8PP59922 312 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 ERVK-16P61578 105 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 HOGA1Q86XE5 327 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 HINT2Q9BX68 163 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 THYN1Q9P016 225 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 UFC1Q9Y3C8 167 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 ETV7Q9Y603 341 aa10.86□□□□□ -0.67
SDC1-204ENST00000429035 IGHV3-21A0A0B4J1V1 117 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 IGLC7A0M8Q6 106 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 OR2T8A6NH00 312 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 UPK2O00526 184 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 CYB5BO43169 146 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 HPRT1P00492 218 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 ZNF818PQ6ZRF7 136 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 ZBTB34Q8NCN2 500 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 OR10W1Q8NGF6 305 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 ZNF502Q8TBZ5 544 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 MARC2Q969Z3 335 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 QTRT1Q9BXR0 403 aaKnown RBP10.85□□□□□ -0.67
SDC1-204ENST00000429035 Q9H521 79 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 EHFQ9NZC4 300 aa10.85□□□□□ -0.67
SDC1-204ENST00000429035 RBFOX2O43251 390 aaKnown RBP eCLIP10.84□□□□□ -0.67
SDC1-204ENST00000429035 TGOLN2O43493 480 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 RLN1P04808 185 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 MSMO1Q15800 293 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 SLC25A24Q6NUK1 477 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 SLC38A6Q8IZM9 456 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 UBAC2Q8NBM4 344 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 OVOL2Q9BRP0 275 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 C20orf24Q9BUV8 137 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 DIABLOQ9NR28 239 aa10.84□□□□□ -0.67
SDC1-204ENST00000429035 PLECQ15149 4684 aaKnown RBP10.84□□□□□ -0.67
SDC1-204ENST00000429035 IGHV3OR16-8A0A075B7F1 116 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 A0A0J9YWU9 116 aa10.83□□□□□ -0.68
SDC1-204ENST00000429035 ZNF207O43670 478 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms