RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 ZNF236Q9UL36 1845 aa12.33□□□□□ -0.44
PTPRU-204ENST00000428026 A0A1B0GWB2 263 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 TCF23Q7RTU1 214 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 NR2C2APQ86WQ0 139 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 SYT8Q8NBV8 401 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 RTBDNQ9BSG5 229 aaPredicted RBP12.32□□□□□ -0.44
PTPRU-204ENST00000428026 VENTXO95231 258 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 IGLV3-19P01714 112 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 IL6RP08887 468 aaPredicted RBP12.32□□□□□ -0.44
PTPRU-204ENST00000428026 PMCHL2Q9BQD1 86 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 MRPL16Q9NX20 251 aaKnown RBP12.32□□□□□ -0.44
PTPRU-204ENST00000428026 IL36BQ9NZH7 164 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 SS18L1O75177 396 aaPredicted RBP12.32□□□□□ -0.44
PTPRU-204ENST00000428026 ADRA2AP08913 450 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 UCP3P55916 312 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 SLC25A28Q96A46 364 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 LINC00470Q9BZP3 86 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 PRR19A6NJB7 356 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 C16orf97H3BN30 126 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 LIPFP07098 398 aa12.32□□□□□ -0.44
PTPRU-204ENST00000428026 TRBV20OR9-2A0A075B6H5 130 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 TYMSP04818 313 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 ZNF658BQ4V348 819 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-204ENST00000428026 FAM74A4Q5TZK3 123 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 CYP2G1PQ6ZSU1 146 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 TMEM56-RWDD3S4R434 201 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 SNRNP200O75643 2136 aaKnown RBP12.31□□□□□ -0.44
PTPRU-204ENST00000428026 CLDND2Q8NHS1 167 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 ZNF646O15015 1829 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-204ENST00000428026 MC5RP33032 325 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 SRXN1Q9BYN0 137 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H1AQ02539 215 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-204ENST00000428026 RELQ04864 619 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-204ENST00000428026 GALNT14Q96FL9 552 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 METTL26Q96S19 204 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 PRDM14Q9GZV8 571 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 SDF2L1Q9HCN8 221 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 SPCS1Q9Y6A9 102 aa12.31□□□□□ -0.44
PTPRU-204ENST00000428026 IGHV3OR16-12A0A075B7B8 117 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 PROB1E7EW31 1015 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 APOHP02749 345 aaPredicted RBP12.3□□□□□ -0.44
PTPRU-204ENST00000428026 CDCP2Q5VXM1 449 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 IDI2-AS1Q9NZ38 188 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 GPR179Q6PRD1 2367 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 SERF1AO75920 110 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 RPL39P5Q59GN2 51 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 GPR82Q96P67 336 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 PKIBQ9C010 78 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 OR11H12B2RN74 326 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 JOSD1Q15040 202 aaPredicted RBP12.3□□□□□ -0.44
PTPRU-204ENST00000428026 LINC00305Q7Z4B0 112 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 OR11H1Q8NG94 326 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 OR11H2Q8NH07 326 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 CACNA1IQ9P0X4 2223 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 EFEMP2O95967 443 aa12.3□□□□□ -0.44
PTPRU-204ENST00000428026 NDUFAF3Q9BU61 184 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 DERL1Q9BUN8 251 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 CA1P00915 261 aaPredicted RBP12.29□□□□□ -0.44
PTPRU-204ENST00000428026 DMRTA2Q96SC8 542 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 LAMTOR2Q9Y2Q5 125 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 IGHV3OR16-13A0A075B7E8 117 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 IGHV3-74A0A0B4J1X5 117 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 C1QTNF9BB2RNN3 333 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 RRN3P1Q2M238 152 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 OR4C13Q8NGP0 309 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 A6NNC1 897 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 FAM214BQ7L5A3 538 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 PLSCR2Q9NRY7 297 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 MOB4Q9Y3A3 225 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 H3BUT2 72 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 MEIG1Q5JSS6 88 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 PCSK4Q6UW60 755 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 UNQ5815/PRO19632Q6UWF5 114 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 CLDN16Q9Y5I7 305 aa12.29□□□□□ -0.44
PTPRU-204ENST00000428026 A0A087WV48 116 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 IGKV1D-43A0A0B4J1Z2 117 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 IGKV3OR2-268A0A0C4DH90 116 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 FOXI3A8MTJ6 420 aaPredicted RBP12.28□□□□□ -0.44
PTPRU-204ENST00000428026 RPS20P60866 119 aaKnown RBP12.28□□□□□ -0.44
PTPRU-204ENST00000428026 RNF126Q9BV68 326 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 ALPK2Q86TB3 2170 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 PF4V1P10720 104 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 COX6A1P12074 109 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 IGFBP2P18065 325 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 CTHRC1Q96CG8 243 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 A0A087WWC5 75 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 CA7P43166 264 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 MEGF9Q9H1U4 602 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 PTPRFP10586 1907 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 WNT9BO14905 357 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 RPL23P62829 140 aaKnown RBP12.28□□□□□ -0.44
PTPRU-204ENST00000428026 TMEM170BQ5T4T1 132 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 C1orf185Q5T7R7 199 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 KLF14Q8TD94 323 aaPredicted RBP12.28□□□□□ -0.44
PTPRU-204ENST00000428026 PRELID3AQ96N28 172 aa12.28□□□□□ -0.44
PTPRU-204ENST00000428026 MDC1Q14676 2089 aaKnown RBP12.28□□□□□ -0.44
PTPRU-204ENST00000428026 NDUFS8O00217 210 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BKO60814 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BJP06899 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BOP23527 126 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms