RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 M0QZ24 198 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 PSPNO60542 156 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 IGLL1P15814 213 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 VDAC2P45880 294 aaPredicted RBP8.87□□□□□ -0.99
USP54-204ENST00000422491 TCL1AP56279 114 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 RHOGP84095 191 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 PQLC2Q6ZP29 291 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 PHF7Q9BWX1 381 aaPredicted RBP8.87□□□□□ -0.99
USP54-204ENST00000422491 OCIAD1Q9NX40 245 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 SMIM27A0A1W2PRY6 76 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 HELTA6NFD8 242 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 KLF7O75840 302 aaPredicted RBP8.86□□□□□ -0.99
USP54-204ENST00000422491 MT-CO2P00403 227 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 CGAP01215 116 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 HBZP02008 142 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 P04436 131 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 TBR1Q16650 682 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 MRPL54Q6P161 138 aaKnown RBP8.86□□□□□ -0.99
USP54-204ENST00000422491 FBXO46Q6PJ61 603 aaPredicted RBP8.86□□□□□ -0.99
USP54-204ENST00000422491 TMEM30CPA0ZSE6 113 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 ISLRO14498 428 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 GFRA3O60609 400 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 CEBPDP49716 269 aaPredicted RBP8.86□□□□□ -0.99
USP54-204ENST00000422491 SLAQ13239 276 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 EBLN2Q6P2I7 272 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 STPG3Q8N7X2 389 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 POLDIP2Q9Y2S7 368 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 R4GN57 208 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 ARL2-SNX15V9GYD0 113 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 PTPRBP23467 1997 aa8.86□□□□□ -0.99
USP54-204ENST00000422491 FAM181BA6NEQ2 426 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 APCSP02743 223 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 CRYBB3P26998 211 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 ARR3P36575 388 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 LTBRP36941 435 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 TNXAQ16473 311 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 LRRC10Q5BKY1 277 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 OR8B3Q8NGG8 313 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 OR8B2Q96RD0 313 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 HSD17B10Q99714 261 aaKnown RBP8.85□□□□□ -0.99
USP54-204ENST00000422491 RTL8AQ9BWD3 113 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 CEP192Q8TEP8 1941 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 OOEPA6NGQ2 149 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 IGLV2-8P01709 118 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 RPS20P60866 119 aaKnown RBP8.85□□□□□ -0.99
USP54-204ENST00000422491 TUSC5Q8IXB3 177 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 GCNT2Q8N0V5 402 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 NINJ1Q92982 152 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 CDX2Q99626 313 aaPredicted RBP8.85□□□□□ -0.99
USP54-204ENST00000422491 NPVFQ9HCQ7 196 aa8.85□□□□□ -0.99
USP54-204ENST00000422491 TECRQ9NZ01 308 aaKnown RBP8.85□□□□□ -0.99
USP54-204ENST00000422491 LY6G6EA0A0G2JKS1 128 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 FAM90A9PA6NNJ1 464 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 HAND1O96004 215 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 MT-CO3P00414 261 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 LINC00869P0C866 280 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 Q56UQ5 140 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 Q8TCH9 128 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 NEUROG1Q92886 237 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 HEYLQ9NQ87 328 aaPredicted RBP8.84□□□□□ -0.99
USP54-204ENST00000422491 IL19Q9UHD0 177 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 U3KQA8 63 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 C2orf70A6NJV1 201 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 RELBQ01201 579 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 PLP2Q04941 152 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 FOXF2Q12947 444 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 OR1C1Q15619 314 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 VAMP3Q15836 100 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 SLC35E4Q6ICL7 350 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 SPACA3Q8IXA5 215 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 ABHD12Q8N2K0 398 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 OR52E5Q8NH55 327 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 CST9LQ9H4G1 147 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 GP6Q9HCN6 339 aa8.84□□□□□ -0.99
USP54-204ENST00000422491 PINLYPA6NC86 204 aa8.84□□□□□ -1
USP54-204ENST00000422491 IZUMO1RA6ND01 250 aa8.84□□□□□ -1
USP54-204ENST00000422491 ZNF891A8MT65 544 aaPredicted RBP8.84□□□□□ -1
USP54-204ENST00000422491 AESQ08117 197 aa8.84□□□□□ -1
USP54-204ENST00000422491 TIGITQ495A1 244 aa8.84□□□□□ -1
USP54-204ENST00000422491 ZNF766Q5HY98 468 aa8.84□□□□□ -1
USP54-204ENST00000422491 LDLRAD2Q5SZI1 272 aa8.84□□□□□ -1
USP54-204ENST00000422491 IBA57Q5T440 356 aaKnown RBP8.84□□□□□ -1
USP54-204ENST00000422491 MIR17HGQ75NE6 70 aa8.84□□□□□ -1
USP54-204ENST00000422491 SPATA12Q7Z6I5 190 aa8.84□□□□□ -1
USP54-204ENST00000422491 SMRP1Q8NCR6 262 aa8.84□□□□□ -1
USP54-204ENST00000422491 COQ2Q96H96 371 aa8.84□□□□□ -1
USP54-204ENST00000422491 TET2Q6N021 2002 aaPredicted RBP8.83□□□□□ -1
USP54-204ENST00000422491 HCFC1P51610 2035 aa8.83□□□□□ -1
USP54-204ENST00000422491 CACNA1DQ01668 2161 aa8.83□□□□□ -1
USP54-204ENST00000422491 IGHV3-64DA0A0J9YX35 117 aa8.83□□□□□ -1
USP54-204ENST00000422491 TAX1BP3O14907 124 aa8.83□□□□□ -1
USP54-204ENST00000422491 PROP1O75360 226 aa8.83□□□□□ -1
USP54-204ENST00000422491 HSBP1O75506 76 aa8.83□□□□□ -1
USP54-204ENST00000422491 SP1P08047 785 aa8.83□□□□□ -1
USP54-204ENST00000422491 USF1P22415 310 aaPredicted RBP8.83□□□□□ -1
USP54-204ENST00000422491 GDF1P27539 372 aa8.83□□□□□ -1
USP54-204ENST00000422491 BPIFB3P59826 476 aa8.83□□□□□ -1
USP54-204ENST00000422491 UBE2G1P62253 170 aa8.83□□□□□ -1
USP54-204ENST00000422491 PRR20EP86478 221 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms