RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 H2BFSP57053 126 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 HILS1P60008 231 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 CYCSP99999 105 aaKnown RBP14.36□□□□□ -0.11
SDC1-203ENST00000403076 FOXRED2Q8IWF2 684 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 ABHD5Q8WTS1 349 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 HINT2Q9BX68 163 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 ZNF436Q9C0F3 470 aaPredicted RBP14.36□□□□□ -0.11
SDC1-203ENST00000403076 ESM1Q9NQ30 184 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 MXRA5Q9NR99 2828 aa14.35□□□□□ -0.11
SDC1-203ENST00000403076 NSD1Q96L73 2696 aaPredicted RBP14.35□□□□□ -0.11
SDC1-203ENST00000403076 ST8SIA3O43173 380 aa14.35□□□□□ -0.11
SDC1-203ENST00000403076 HLA-DRB1P01911 266 aa14.35□□□□□ -0.11
SDC1-203ENST00000403076 MYOD1P15172 320 aa14.35□□□□□ -0.11
SDC1-203ENST00000403076 TMEM14BQ9NUH8 114 aa14.35□□□□□ -0.11
SDC1-203ENST00000403076 FOXA2Q9Y261 457 aaPredicted RBP14.35□□□□□ -0.11
SDC1-203ENST00000403076 CLDN34H7C241 214 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 TCF21O43680 179 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 AMY1AP04745 511 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 NKX2-1P43699 371 aaPredicted RBP14.34□□□□□ -0.11
SDC1-203ENST00000403076 HSPE1P61604 102 aaKnown RBP14.34□□□□□ -0.11
SDC1-203ENST00000403076 CX3CL1P78423 397 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 CD83Q01151 205 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 FXYD3Q14802 87 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 MRGPRG-AS1Q2M3A8 158 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 ZNF429Q86V71 674 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 OR1L8Q8NGR8 309 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 NPFFR1Q9GZQ6 430 aa14.34□□□□□ -0.11
SDC1-203ENST00000403076 TEX50A0A1B0GTY4 177 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 PITX3O75364 302 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 RPL27AP46776 148 aaKnown RBP14.33□□□□□ -0.12
SDC1-203ENST00000403076 BLCAPP62952 87 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 CXorf66Q5JRM2 361 aaPredicted RBP14.33□□□□□ -0.12
SDC1-203ENST00000403076 C10orf55Q5SWW7 151 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 ZNF562Q6V9R5 426 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 OR4D5Q8NGN0 318 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 OR5B3Q8NH48 314 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 GRPEL2Q8TAA5 225 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 FYTTD1Q96QD9 318 aaKnown RBP14.33□□□□□ -0.12
SDC1-203ENST00000403076 NMES1Q9C002 83 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 CACFD1Q9UGQ2 172 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 TNCP24821 2201 aa14.33□□□□□ -0.12
SDC1-203ENST00000403076 CEBPZOSA8MTT3 80 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 TRIM77I1YAP6 450 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 WRBO00258 174 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 CRYBA1P05813 215 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 FGF2P09038 288 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 GIPP09681 153 aaPredicted RBP14.32□□□□□ -0.12
SDC1-203ENST00000403076 COMPP49747 757 aaPredicted RBP14.32□□□□□ -0.12
SDC1-203ENST00000403076 S100A10P60903 97 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 UBA52P62987 128 aaKnown RBP14.32□□□□□ -0.12
SDC1-203ENST00000403076 SPINK9Q5DT21 86 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 ARSJQ5FYB0 599 aaPredicted RBP14.32□□□□□ -0.12
SDC1-203ENST00000403076 ASB13Q8WXK3 278 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 WDR89Q96FK6 387 aaPredicted RBP14.32□□□□□ -0.12
SDC1-203ENST00000403076 MAGT1Q9H0U3 335 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 ZNF257Q9Y2Q1 563 aa14.32□□□□□ -0.12
SDC1-203ENST00000403076 IGHV7-81A0A0B4J1V7 117 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 FAM181BA6NEQ2 426 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 FAM90A26D6RGX4 464 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 CCNKO75909 580 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 RNASE1P07998 156 aaKnown RBP14.31□□□□□ -0.12
SDC1-203ENST00000403076 SPCS3P61009 180 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 TNFRSF9Q07011 255 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 OR52E5Q8NH55 327 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 SRSF12Q8WXF0 261 aaKnown RBP14.31□□□□□ -0.12
SDC1-203ENST00000403076 ARPC1AQ92747 370 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 HSPB9Q9BQS6 159 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 PRSS22Q9GZN4 317 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 ENY2Q9NPA8 101 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 PARP11Q9NR21 331 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 LSM5Q9Y4Y9 91 aaKnown RBP14.31□□□□□ -0.12
SDC1-203ENST00000403076 PLXNB1O43157 2135 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 MSGN1A6NI15 193 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 MED6O75586 246 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 MBPP02686 304 aaPredicted RBP14.31□□□□□ -0.12
SDC1-203ENST00000403076 HOXA1P49639 335 aaPredicted RBP14.31□□□□□ -0.12
SDC1-203ENST00000403076 RAP2BP61225 183 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 ID3Q02535 119 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 SRSF4Q08170 494 aaKnown RBP14.31□□□□□ -0.12
SDC1-203ENST00000403076 LRRC37A5PQ49AS3 106 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 SLC35E3Q7Z769 313 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 FAM103A1Q9BTL3 118 aaKnown RBP14.31□□□□□ -0.12
SDC1-203ENST00000403076 RBKSQ9H477 322 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 HSPB7Q9UBY9 170 aa14.31□□□□□ -0.12
SDC1-203ENST00000403076 ANK3Q12955 4377 aaKnown RBP14.3□□□□□ -0.12
SDC1-203ENST00000403076 TEP1Q99973 2627 aaKnown RBP14.3□□□□□ -0.12
SDC1-203ENST00000403076 IL15RAQ13261 267 aa14.3□□□□□ -0.12
SDC1-203ENST00000403076 AARDQ4LEZ3 155 aa14.3□□□□□ -0.12
SDC1-203ENST00000403076 AKAP14Q86UN6 197 aa14.3□□□□□ -0.12
SDC1-203ENST00000403076 PPP1R1CQ8WVI7 109 aa14.3□□□□□ -0.12
SDC1-203ENST00000403076 PLEKHA3Q9HB20 300 aa14.3□□□□□ -0.12
SDC1-203ENST00000403076 NDUFA4L2Q9NRX3 87 aa14.3□□□□□ -0.12
SDC1-203ENST00000403076 ZFP57Q9NU63 452 aa14.3□□□□□ -0.12
SDC1-203ENST00000403076 E7EUB6 86 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 KCNAB3O43448 404 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 SYNGR2O43760 224 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 RLN2P04090 185 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 APELAP0DMC3 54 aa14.29□□□□□ -0.12
SDC1-203ENST00000403076 POLR2GP62487 172 aaKnown RBP eCLIP14.29□□□□□ -0.12
SDC1-203ENST00000403076 SSBP2P81877 361 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms