RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 HAND1O96004 215 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 TSKUQ8WUA8 353 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 DCTN5Q9BTE1 182 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 GAL3ST2Q9H3Q3 398 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 COX11Q9Y6N1 276 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 YLPM1P49750 1951 aaKnown RBP13.18□□□□□ -0.3
CKAP4-201ENST00000378026 TRAV3A0A0B4J244 114 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 HELTA6NFD8 242 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 CBY3A6NI87 242 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 BMPR1BO00238 502 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 EFNB3Q15768 340 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 DCAF12Q5T6F0 453 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 STUMQ69YW2 141 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 KLHDC1Q8N7A1 406 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 OR4A16Q8NH70 328 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 RTL8AQ9BWD3 113 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 KMT2EQ8IZD2 1858 aa13.18□□□□□ -0.3
CKAP4-201ENST00000378026 TNRC6AQ8NDV7 1962 aaKnown RBP13.18□□□□□ -0.3
CKAP4-201ENST00000378026 VAMP3Q15836 100 aa13.17□□□□□ -0.3
CKAP4-201ENST00000378026 SSBP3Q9BWW4 388 aaPredicted RBP13.17□□□□□ -0.3
CKAP4-201ENST00000378026 TMEM30CPA0ZSE6 113 aa13.17□□□□□ -0.3
CKAP4-201ENST00000378026 PSG5Q15238 335 aa13.17□□□□□ -0.3
CKAP4-201ENST00000378026 TAAR6Q96RI8 345 aa13.17□□□□□ -0.3
CKAP4-201ENST00000378026 SLC35D1Q9NTN3 355 aa13.17□□□□□ -0.3
CKAP4-201ENST00000378026 S100A7P31151 101 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 MIR17HGQ75NE6 70 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 STPG3Q8N7X2 389 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 FAM122AQ96E09 287 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 WDR54Q9H977 334 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 AHCTF1Q8WYP5 2266 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 LOC102724200A0A096LPH7 203 aaPredicted RBP13.16□□□□□ -0.3
CKAP4-201ENST00000378026 FAM166BA8MTA8 275 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 CLDN18P56856 261 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 CX3CL1P78423 397 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 FBLN7Q53RD9 439 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 ZBTB34Q8NCN2 500 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 TXNDC17Q9BRA2 123 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 HINT2Q9BX68 163 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 CDC42EP3Q9UKI2 254 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 MUC3AQ02505 3323 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 TRAV9-1A0A075B6T8 112 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 AHRRA9YTQ3 701 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 SS18L1O75177 396 aaPredicted RBP13.16□□□□□ -0.3
CKAP4-201ENST00000378026 FAM216AQ8WUB2 273 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 LOXL4Q96JB6 756 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 HCFC1P51610 2035 aa13.16□□□□□ -0.3
CKAP4-201ENST00000378026 LY6G6EA0A0G2JKS1 128 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 OR10J4P0C629 311 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 ARR3P36575 388 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 Q0VFX4 171 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 EIF4EBP1Q13541 118 aaPredicted RBP13.15□□□□□ -0.3
CKAP4-201ENST00000378026 OR10J3Q5JRS4 329 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 Q6ZR03 302 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 U3KQA8 63 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 PRR14LQ5THK1 2151 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 ASPMQ8IZT6 3477 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 TRGV10A0A0A0MS01 117 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 TMEM249Q2WGJ8 235 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 WDR73Q6P4I2 378 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 ZNF439Q8NDP4 499 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 HES7Q9BYE0 225 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 CLCF1Q9UBD9 225 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 POLDIP2Q9Y2S7 368 aa13.15□□□□□ -0.3
CKAP4-201ENST00000378026 APCSP02743 223 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 CELA3BP08861 270 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 USF1P22415 310 aaPredicted RBP13.14□□□□□ -0.31
CKAP4-201ENST00000378026 GATA2P23769 480 aaPredicted RBP13.14□□□□□ -0.31
CKAP4-201ENST00000378026 FOLR3P41439 243 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 RHOBP62745 196 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 FOXF2Q12947 444 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 SLAQ13239 276 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 EDDM3AQ14507 147 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 TNXAQ16473 311 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 OR2Y1Q8NGV0 311 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 HSD17B10Q99714 261 aaKnown RBP13.14□□□□□ -0.31
CKAP4-201ENST00000378026 METRNQ9UJH8 293 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 TRBV9A0A0B4J1U6 114 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 HSBP1O75506 76 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 GPR6P46095 362 aaPredicted RBP13.14□□□□□ -0.31
CKAP4-201ENST00000378026 TIGITQ495A1 244 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 ALKBH2Q6NS38 261 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 OR13A1Q8NGR1 328 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 TMEM45BQ96B21 275 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 MPDU1O75352 247 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 MT-CO2P00403 227 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 CDKN1BP46527 198 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 ERVK11-1P61568 191 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 RPL19P84098 196 aaKnown RBP13.14□□□□□ -0.31
CKAP4-201ENST00000378026 NRN1LQ496H8 165 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 MDP1Q86V88 176 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 C1orf159Q96HA4 380 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 VPS25Q9BRG1 176 aa13.14□□□□□ -0.31
CKAP4-201ENST00000378026 IGHV2OR16-5A0A0B4J2B6 119 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 OOEPA6NGQ2 149 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 C9JCJ5 164 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 ITGB1BP1O14713 200 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 OR7C2O60412 319 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 MT-ND6P03923 174 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 IGLL1P15814 213 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 IGFBP2P18065 325 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms