RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 IGKV1-13P0DP09 117 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 NBL1P41271 181 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 SIGIRRQ6IA17 410 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 LAMTOR1Q6IAA8 161 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 PNRC2Q9NPJ4 139 aaKnown RBP12.47□□□□□ -0.41
COL17A1-201ENST00000353479 F12P00748 615 aaPredicted RBP12.47□□□□□ -0.41
COL17A1-201ENST00000353479 RELQ04864 619 aaPredicted RBP12.47□□□□□ -0.41
COL17A1-201ENST00000353479 DGAT2L7PQ6IED9 249 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 OR51G1Q8NGK1 321 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 GALNT14Q96FL9 552 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 NABP2Q9BQ15 211 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 TMEM133Q9H2Q1 129 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 OR5AL1P0C617 328 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 NPPCP23582 126 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 OR4B1Q8NGF8 309 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 GTF3AQ92664 365 aaKnown RBP12.47□□□□□ -0.41
COL17A1-201ENST00000353479 ZP1P60852 638 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 SNRPEP62304 92 aaKnown RBP12.47□□□□□ -0.41
COL17A1-201ENST00000353479 MEF2BQ02080 365 aaPredicted RBP12.47□□□□□ -0.41
COL17A1-201ENST00000353479 MORN2Q502X0 79 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 YPEL1O60688 119 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 CD24P25063 80 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 CA7P43166 264 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 IER3P46695 156 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 PPP1R27Q86WC6 154 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 YPEL2Q96QA6 119 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 OR51M1Q9H341 326 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 ESPL1Q14674 2120 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 CRISP2P16562 243 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 FAM89BQ8N5H3 189 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 IGHV3OR16-12A0A075B7B8 117 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF253O75346 499 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 NMBP08949 121 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF474Q6S9Z5 364 aaPredicted RBP12.46□□□□□ -0.41
COL17A1-201ENST00000353479 ARPC1AQ92747 370 aa12.46□□□□□ -0.41
COL17A1-201ENST00000353479 CFDP00746 253 aaPredicted RBP12.46□□□□□ -0.42
COL17A1-201ENST00000353479 TOMM20LQ6UXN7 152 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 GBF1Q92538 1859 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 KIAA1671Q9BY89 1806 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 IGKV1-27A0A075B6S5 117 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 TCAPO15273 167 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 PMS2P11Q13670 270 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 OR10D4PQ8NGN7 298 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 FBXL7Q9UJT9 491 aa12.46□□□□□ -0.42
COL17A1-201ENST00000353479 PHOX2AO14813 284 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 PF4P02776 101 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 SELLP14151 372 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 NBASA2RRP1 2371 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 TMEM189A5PLL7 270 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 SIGLEC5O15389 551 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 RPL7P18124 248 aaKnown RBP12.45□□□□□ -0.42
COL17A1-201ENST00000353479 MPTX1A8MV57 137 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 IFI27L2Q9H2X8 130 aa12.45□□□□□ -0.42
COL17A1-201ENST00000353479 IGHV3-49A0A0A0MS15 119 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 C1QTNF9BB2RNN3 333 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 SRRM5B3KS81 715 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 C1QTNF9P0C862 333 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 SNRNP200O75643 2136 aaKnown RBP12.44□□□□□ -0.42
COL17A1-201ENST00000353479 SNURFLB1AK76 121 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 CD8AP01732 235 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 SAA1P0DJI8 122 aaPredicted RBP12.44□□□□□ -0.42
COL17A1-201ENST00000353479 ATP5IP56385 69 aaPredicted RBP12.44□□□□□ -0.42
COL17A1-201ENST00000353479 HSPB7Q9UBY9 170 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 HSPB1P04792 205 aaKnown RBP12.44□□□□□ -0.42
COL17A1-201ENST00000353479 HIST3H3Q16695 136 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 C2orf68Q2NKX9 166 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 COX19Q49B96 90 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 VOPP1Q96AW1 172 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 FUT9Q9Y231 359 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 LILRA1O75019 489 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 FHITP49789 147 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 PSG9Q00887 426 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 RNF212Q495C1 297 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 DUX5Q96PT3 197 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 FOXA2Q9Y261 457 aaPredicted RBP12.44□□□□□ -0.42
COL17A1-201ENST00000353479 CACNA1DQ01668 2161 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 MSGN1A6NI15 193 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 FAM74A7A6NL05 159 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 ZNF207O43670 478 aaKnown RBP12.44□□□□□ -0.42
COL17A1-201ENST00000353479 COLCA1Q6ZS62 124 aa12.44□□□□□ -0.42
COL17A1-201ENST00000353479 IGKV1D-8A0A087WSZ0 117 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 ISLRO14498 428 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 EFNA4P52798 201 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 CYP2G1PQ6ZSU1 146 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 SGK494Q96LW2 274 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 SMDT1Q9H4I9 107 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 IGHV3-66A0A0C4DH42 116 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 LINC00305Q7Z4B0 112 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 PIP4P1Q86T03 277 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 SGMS2Q8NHU3 365 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 DIDO1Q9BTC0 2240 aaKnown RBP12.43□□□□□ -0.42
COL17A1-201ENST00000353479 ELOA3CA0A087WX78 387 aaPredicted RBP12.43□□□□□ -0.42
COL17A1-201ENST00000353479 M0R2Z0 102 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 RARRES2Q99969 163 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 ROS1P08922 2347 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 PLXNA2O75051 1894 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 NUP210Q8TEM1 1887 aaPredicted RBP12.43□□□□□ -0.42
COL17A1-201ENST00000353479 NBR2O15453 112 aa12.43□□□□□ -0.42
COL17A1-201ENST00000353479 IL6RP08887 468 aaPredicted RBP12.43□□□□□ -0.42
COL17A1-201ENST00000353479 TWIST1Q15672 202 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms