RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PQLC2Q6ZP29 291 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 ST6GALNAC6Q969X2 333 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 BORCS7Q96B45 105 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 FAM122AQ96E09 287 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 IMMP1LQ96LU5 166 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 VPS25Q9BRG1 176 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 PHF7Q9BWX1 381 aaPredicted RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 PKIBQ9C010 78 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 MRPL27Q9P0M9 148 aaKnown RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 KMT2EQ8IZD2 1858 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 LOC102723996A0A087X1L8 192 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 IGHV3-64DA0A0J9YX35 117 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 FAM181BA6NEQ2 426 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 C2orf70A6NJV1 201 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 ANKRD30BLA7E2S9 258 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 J3QT63 122 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 MPDU1O75352 247 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 IGLV2-8P01709 118 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 GNG4P50150 75 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 SELENOVP59797 346 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 HOXA4Q00056 320 aaPredicted RBP5.62□□□□□ -1.51
VPS39-202ENST00000348544 CATR1Q13166 79 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 MPV17L2Q567V2 206 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 WIPI1Q5MNZ9 446 aaPredicted RBP5.62□□□□□ -1.51
VPS39-202ENST00000348544 ZBTB34Q8NCN2 500 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 TSTD1Q8NFU3 115 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 OR8B3Q8NGG8 313 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 OR8B2Q96RD0 313 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 RARRES3Q9UL19 164 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 LSM4Q9Y4Z0 139 aaKnown RBP5.62□□□□□ -1.51
VPS39-202ENST00000348544 SMIM27A0A1W2PRY6 76 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 OR2T8A6NH00 312 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 AHRRA9YTQ3 701 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 PSPNO60542 156 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 CA1P00915 261 aaPredicted RBP5.62□□□□□ -1.51
VPS39-202ENST00000348544 HLA-DQA1P01909 254 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 APCSP02743 223 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 CELA3BP08861 270 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 COX6A1P12074 109 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 CRYBB3P26998 211 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 ERVK11-1P61568 191 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 NRN1LQ496H8 165 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 LRRC10Q5BKY1 277 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 GDF5OSQ5U4N7 250 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 VHLLQ6RSH7 139 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 NUDT10Q8NFP7 164 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 Q8TCH9 128 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 ZPBPQ9BS86 351 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 OSTCQ9NRP0 149 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 MPC1Q9Y5U8 109 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 PTPRBP23467 1997 aa5.62□□□□□ -1.51
VPS39-202ENST00000348544 TET2Q6N021 2002 aaPredicted RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 A0A1W2PQM1 296 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 HELTA6NFD8 242 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 HBZP02008 142 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 RAC2P15153 192 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 AREGP15514 252 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 OTX2P32243 289 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 SSTR5P35346 364 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 VDAC2P45880 294 aaPredicted RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 TMPRSS3P57727 454 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 MIR17HGQ75NE6 70 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 SYT13Q7L8C5 426 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 SMIM15Q7Z3B0 74 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 SPACA3Q8IXA5 215 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 ABHD12Q8N2K0 398 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 STPG3Q8N7X2 389 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 SCCPDHQ8NBX0 429 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 IFI44Q8TCB0 444 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 FAM168AQ92567 244 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 CDX2Q99626 313 aaPredicted RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 FSCN3Q9NQT6 498 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 TRAV3A0A0B4J244 114 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 IGHV5-10-1A0A0J9YXX1 117 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 GFRA3O60609 400 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 TFF1P04155 84 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 FAM214BQ7L5A3 538 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 RPS19BP1Q86WX3 136 aaKnown RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 TMEM45BQ96B21 275 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 GALMQ96C23 342 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 TAAR6Q96RI8 345 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 CSTL1Q9H114 145 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 KCNIP1Q9NZI2 227 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 CACNA1DQ01668 2161 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 IGHV3-43A0A0B4J1X8 118 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 TMEM238LA0A1B0GVL6 79 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 GGTLC3B5MD39 225 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 M0R2Z0 102 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 ISLRO14498 428 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 PROP1O75360 226 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 MRPL33O75394 65 aaKnown RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 MT-CO3P00414 261 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 LINC00869P0C866 280 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 IGHV3-43DP0DP04 118 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 USF1P22415 310 aaPredicted RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 CA7P43166 264 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 RPS20P60866 119 aaKnown RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 UBE2G1P62253 170 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 RPL19P84098 196 aaKnown RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 ZNF146Q15072 292 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms