RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 HTR1DP28221 377 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 CA7P43166 264 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 RPL31P62899 125 aaKnown RBP6.82□□□□□ -1.32
ATG4A-201ENST00000343524 TFF3Q07654 80 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 KIAA2026Q5HYC2 2103 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 CDCP2Q5VXM1 449 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 LCN12Q6JVE5 192 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 TMEM108Q6UXF1 575 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 Q6ZPA2 131 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 Q6ZRM9 215 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 BPIFA4PQ86YQ2 179 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 FAM19A2Q8N3H0 131 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 SPSB4Q96A44 273 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 CHCHD1Q96BP2 118 aaKnown RBP6.82□□□□□ -1.32
ATG4A-201ENST00000343524 OR2V2Q96R30 315 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 PLSCR4Q9NRQ2 329 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 PLEK2Q9NYT0 353 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 WDR83OSQ9Y284 106 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 MSRB2Q9Y3D2 182 aa6.82□□□□□ -1.32
ATG4A-201ENST00000343524 SMIM27A0A1W2PRY6 76 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 J3QKU1 62 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 K7EN84 100 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 PRKNO60260 465 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-201ENST00000343524 SMPD2O60906 423 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 VAMP5O95183 116 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 HBZP02008 142 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 PRB1P04280 392 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 HNRNPA1P09651 372 aaKnown RBP eCLIP6.81□□□□□ -1.32
ATG4A-201ENST00000343524 FTH1P19P0C7X4 201 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 ARL14EPLP0DKL9 152 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 AZU1P20160 251 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 PSG7Q13046 419 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 ZNF718Q3SXZ3 478 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 DMRTC1Q5HYR2 192 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 CARD17Q5XLA6 110 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 PLCXD3Q63HM9 321 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 EBLN2Q6P2I7 272 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 WDR74Q6RFH5 385 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-201ENST00000343524 WFDC8Q8IUA0 241 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 MRPL43Q8N983 215 aaKnown RBP6.81□□□□□ -1.32
ATG4A-201ENST00000343524 OR2K2Q8NGT1 345 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 DPF1Q92782 380 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 OR2D2Q9H210 308 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-201ENST00000343524 MYO18BQ8IUG5 2567 aa6.81□□□□□ -1.32
ATG4A-201ENST00000343524 LOC400499M0QZD8 3231 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 IGKV3D-11A0A0A0MRZ8 115 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 PMS2P5A8MQ11 134 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 H3BML4 177 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 SYS1-DBNDD2H3BUS1 97 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 OR2J3O76001 311 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 IGKV1-39P01597 117 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 IGKV1D-39P04432 117 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 CELA3BP08861 270 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 HIST1H1EP10412 219 aaKnown RBP6.8□□□□□ -1.32
ATG4A-201ENST00000343524 SSTR5P35346 364 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 FGF12P61328 243 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 RTL8BQ17RB0 113 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 FAM69BQ5VUD6 431 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 RNASEKQ6P5S7 137 aaKnown RBP6.8□□□□□ -1.32
ATG4A-201ENST00000343524 WDR82Q6UXN9 313 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 SYT13Q7L8C5 426 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 RD3Q7Z3Z2 195 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ERASQ7Z444 233 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ZNF611Q8N823 705 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ZNF441Q8N8Z8 693 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ZBTB34Q8NCN2 500 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 OR2AE1Q8NHA4 323 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 GRAMD2BQ96HH9 432 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 C19orf25Q9UFG5 118 aaPredicted RBP6.8□□□□□ -1.32
ATG4A-201ENST00000343524 G3V3Y1 287 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 J3QW42 95 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 RAB29O14966 203 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ZNF207O43670 478 aaKnown RBP6.8□□□□□ -1.32
ATG4A-201ENST00000343524 RHBDL1O75783 438 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 WISP1O95388 367 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 CCNOP22674 350 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 CKS1BP61024 79 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 HSD52Q0P140 79 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 TNXAQ16473 311 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 PDLIM3Q53GG5 364 aaPredicted RBP6.8□□□□□ -1.32
ATG4A-201ENST00000343524 TMEM97Q5BJF2 176 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 PCSK4Q6UW60 755 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ATP5L2Q7Z4Y8 100 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ZDHHC23Q8IYP9 409 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 OR10AG1Q8NH19 301 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 OR1L1Q8NH94 360 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 OR1F12Q8NHA8 337 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 LMX1AQ8TE12 382 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 NEUROG1Q92886 237 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 MRAP2Q96G30 205 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 NPFFR1Q9GZQ6 430 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 CLEC5AQ9NY25 188 aa6.8□□□□□ -1.32
ATG4A-201ENST00000343524 ZNF462Q96JM2 2506 aa6.79□□□□□ -1.32
ATG4A-201ENST00000343524 PPIAL4EA0A075B759 164 aa6.79□□□□□ -1.32
ATG4A-201ENST00000343524 PPIAL4CA0A0B4J2A2 164 aa6.79□□□□□ -1.32
ATG4A-201ENST00000343524 TMEM189A5PLL7 270 aa6.79□□□□□ -1.32
ATG4A-201ENST00000343524 C5orf63A6NC05 138 aa6.79□□□□□ -1.32
ATG4A-201ENST00000343524 FAM231BA6NCW3 169 aa6.79□□□□□ -1.32
ATG4A-201ENST00000343524 LRRC30A6NM36 301 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms