RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 IGHV3-35A0A0C4DH35 117 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 hCG_38984A0A1B0GV85 526 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 ARL14EPLP0DKL9 152 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 MRGPRFQ96AM1 343 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 WFDC6Q9BQY6 131 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 HAPLN2Q9GZV7 340 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 R4GMQ9 66 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 BAZ2BQ9UIF8 2168 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV3-73A0A0B4J1V6 119 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 TRGV4A0A0C4DH28 118 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 FXYD7P58549 80 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 SNRPD3P62318 126 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 CD300CQ08708 224 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 C6orf226Q5I0X4 101 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 FCRL6Q6DN72 434 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 GVQW1Q8N7I0 195 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 PATE1Q8WXA2 126 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 RNF126Q9BV68 326 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 PLA2G12BQ9BX93 195 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 CYTL1Q9NRR1 136 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 MICAL3Q7RTP6 2002 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 NKX2-6A6NCS4 301 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 C12orf77C9JDV5 145 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 PRSS23O95084 383 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 NDPQ00604 133 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM57AQ8TBR7 257 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 LMO7Q8WWI1 1683 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 PLPP2O43688 288 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 SCRG1O75711 98 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 EGR4Q05215 589 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 LINC01559Q495D7 138 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 KLHDC3Q9BQ90 382 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 GNB1LQ9BYB4 327 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 SCRT2Q9NQ03 307 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 OSTCQ9NRP0 149 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 ATRNO75882 1429 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV4-4A0A075B6R2 117 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV3-20A0A0C4DH32 117 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 PSMB5P28074 263 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 CST6Q15828 149 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 TMEM91Q6ZNR0 172 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 STPG3Q8N7X2 389 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 CRIM1Q9NZV1 1036 aa6.54□□□□□ -1.36
LIMCH1-201ENST00000313860 FER1L4A9Z1Z3 1794 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 LINC01553A4QN01 128 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 TBX6O95947 436 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 SRP19P09132 144 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 MPV17P39210 176 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 GLMPQ8WWB7 406 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 CHD4Q14839 1912 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 AKAP11Q9UKA4 1901 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 ROBO3Q96MS0 1386 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 ATAD5Q96QE3 1844 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 BMPERQ8N8U9 685 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 COL22A1Q8NFW1 1626 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 SIVA1O15304 175 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 CR1LQ2VPA4 569 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 PLAC1Q9HBJ0 212 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 C1RLQ9NZP8 487 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 USP54Q70EL1 1684 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV3-72A0A0B4J1Y9 119 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 TRAV26-2A0A0B4J265 109 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM90A10PA6NDY2 464 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM90A8PA6NJQ4 464 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 TARM1B6A8C7 271 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 FXYD1O00168 92 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM90A13PP0C7W8 464 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM90A24PP0C7X0 464 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 CLDN10P78369 228 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 DCAF12Q5T6F0 453 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 SLC25A29Q8N8R3 303 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 RNF122Q9H9V4 155 aa6.53□□□□□ -1.36
LIMCH1-201ENST00000313860 CEACAM1P13688 526 aa6.52□□□□□ -1.36
LIMCH1-201ENST00000313860 COL9A1P20849 921 aa6.52□□□□□ -1.36
LIMCH1-201ENST00000313860 TMEM187Q14656 261 aa6.52□□□□□ -1.36
LIMCH1-201ENST00000313860 OR11H4Q8NGC9 324 aa6.52□□□□□ -1.36
LIMCH1-201ENST00000313860 TIMM21Q9BVV7 248 aa6.52□□□□□ -1.36
LIMCH1-201ENST00000313860 RNF222A6NCQ9 220 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 ZNF750Q32MQ0 723 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 C1orf194Q5T5A4 169 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 ATOH8Q96SQ7 321 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 RPUSD1Q9UJJ7 312 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 CD55P08174 381 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 CCL2P13500 99 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 ACTL10Q5JWF8 245 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 MS4A6EQ96DS6 147 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 SPXQ9BT56 116 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 PRNDQ9UKY0 176 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 SIGLEC9Q9Y336 463 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 ADAMTS13Q76LX8 1427 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV3OR15-7A0A075B7D8 119 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 A0A1W2PRX2 142 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 FNDC10F2Z333 226 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 LY6EQ16553 131 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 ETDBQ3ZM63 59 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 FAM27D1Q5T7N8 215 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 H1FOOQ8IZA3 346 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 DCTN5Q9BTE1 182 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 SIPA1L3O60292 1781 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms