RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 OR2K2Q8NGT1 345 aa14.8□□□□□ -0.04
LIME1-201ENST00000309546 ZNF2Q9BSG1 426 aaPredicted RBP14.8□□□□□ -0.04
LIME1-201ENST00000309546 THAP7Q9BT49 309 aaPredicted RBP14.8□□□□□ -0.04
LIME1-201ENST00000309546 CGB1A6NKQ9 187 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 S1PR2O95136 353 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 CTRB1P17538 263 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 RFX2P48378 723 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 CTRB2Q6GPI1 263 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 ADAMTSL5Q6ZMM2 481 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 OR5H2Q8NGV7 314 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 EEF1AKMT3Q96AZ1 226 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 CCDC140Q96MF4 163 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 COMMD5Q9GZQ3 224 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 TMEM140Q9NV12 185 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 DMRT1Q9Y5R6 373 aa14.79□□□□□ -0.04
LIME1-201ENST00000309546 C2orf70A6NJV1 201 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 UPK2O00526 184 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 RLN1P04808 185 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 HIST1H1BP16401 226 aaKnown RBP14.78□□□□□ -0.04
LIME1-201ENST00000309546 GNRHRP30968 328 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 TAS2R46P59540 309 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 OR2B8PP59922 312 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 CD81P60033 236 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 CD300LFQ8TDQ1 290 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 BORCS5Q969J3 196 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 PLEKHA3Q9HB20 300 aa14.78□□□□□ -0.04
LIME1-201ENST00000309546 EIF4EP06730 217 aaKnown RBP14.77□□□□□ -0.05
LIME1-201ENST00000309546 FOLR2P14207 255 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 MECP2P51608 486 aaKnown RBP14.77□□□□□ -0.05
LIME1-201ENST00000309546 ERVK-16P61578 105 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 POU2AF1Q16633 256 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 GUCA2BQ16661 112 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 HAGHQ16775 308 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 CASC10Q5T4H9 136 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 CACNG8Q8WXS5 425 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 MOB3AQ96BX8 217 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 SPATA25Q9BR10 227 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 PLEKHA2Q9HB19 425 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 PALMDQ9NP74 551 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 ZC4H2Q9NQZ6 224 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 COMMD9Q9P000 198 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 ANAPC10Q9UM13 185 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 SELENOKQ9Y6D0 94 aa14.77□□□□□ -0.05
LIME1-201ENST00000309546 IGLV11-55A0A075B6I3 123 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 ZNF320A2RRD8 509 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 MFSD2BA6NFX1 497 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 PRSS3P35030 304 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 NCS1P62166 190 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 SLC25A46Q96AG3 418 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 CITED4Q96RK1 184 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 NEURL2Q9BR09 285 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 FXYD6Q9H0Q3 95 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 SLC2A8Q9NY64 477 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 COMMD3Q9UBI1 195 aa14.76□□□□□ -0.05
LIME1-201ENST00000309546 IGLC7A0M8Q6 106 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 LGALS9O00182 355 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 TPPPO94811 219 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 LYL1P12980 280 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 HLA-DMAP28067 261 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 HRH1P35367 487 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 DEFB114Q30KQ6 69 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 DHRS11Q6UWP2 260 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 GPHB5Q86YW7 130 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 CXorf58Q96LI9 332 aa14.75□□□□□ -0.05
LIME1-201ENST00000309546 MARCH11A6NNE9 402 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 ZNF785A8K8V0 405 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 PGLYRP1O75594 196 aaPredicted RBP14.74□□□□□ -0.05
LIME1-201ENST00000309546 CD7P09564 240 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 NAT1P18440 290 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 VBP1P61758 197 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 FAM106AQ4KMX7 169 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 LAX1Q8IWV1 398 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 CMTM1Q8IZ96 169 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 OR10W1Q8NGF6 305 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 OR6F1Q8NGZ6 308 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 ISOC1Q96CN7 298 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 WDR89Q96FK6 387 aaPredicted RBP14.74□□□□□ -0.05
LIME1-201ENST00000309546 FUNDC2Q9BWH2 189 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 HINT2Q9BX68 163 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 QTRT1Q9BXR0 403 aaKnown RBP14.74□□□□□ -0.05
LIME1-201ENST00000309546 WFDC10AQ9H1F0 79 aa14.74□□□□□ -0.05
LIME1-201ENST00000309546 TECRQ9NZ01 308 aaKnown RBP14.74□□□□□ -0.05
LIME1-201ENST00000309546 TRBV7-1A0A0A6YYK4 115 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 CLEC3BP05452 202 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 F2RP25116 425 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 GPR183P32249 361 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 LPAR6P43657 344 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 KLK9Q2XQG4 91 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 ZFAND6Q6FIF0 208 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 SNX29P2Q8IUI4 249 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 SRSF8Q9BRL6 282 aaKnown RBP14.73□□□□□ -0.05
LIME1-201ENST00000309546 THYN1Q9P016 225 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 KLK9Q9UKQ9 250 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 CEPT1Q9Y6K0 416 aa14.73□□□□□ -0.05
LIME1-201ENST00000309546 SMIM31A0A1B0GVY4 71 aa14.72□□□□□ -0.05
LIME1-201ENST00000309546 TMEM213A2RRL7 107 aa14.72□□□□□ -0.05
LIME1-201ENST00000309546 GPR31O00270 319 aa14.72□□□□□ -0.05
LIME1-201ENST00000309546 KRASP01116 189 aa14.72□□□□□ -0.05
LIME1-201ENST00000309546 TRAPPC2P0DI81 140 aa14.72□□□□□ -0.05
LIME1-201ENST00000309546 TRAPPC2BP0DI82 140 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms