RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FAM106AQ4KMX7 169 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 C16orf82Q7Z2V1 217 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 DTX1Q86Y01 620 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 HIST3H2BBQ8N257 126 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 AMER3Q8N944 861 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 OR1K1Q8NGR3 316 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 GUCD1Q96NT3 240 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 PIMREGQ9BSJ6 248 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 C5orf66Q9H5L9 145 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 A0A096LPE4 126 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 A0A1W2PPZ6 126 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 FAM106CPP0CH98 169 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 CCL20P78556 96 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 THSD4Q6ZMP0 1018 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 LYPD1Q8N2G4 141 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 TNFRSF14Q92956 283 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 ETV2O00321 342 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 SRFP11831 508 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 ZP1P60852 638 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 SRSF2Q01130 221 aaKnown RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 SLC25A47Q6Q0C1 308 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 PLXND1Q9Y4D7 1925 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 TRAV17A0A0B4J275 112 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM255AQ5JRV8 349 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF418Q8TF45 676 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-201ENST00000303395 PLXNA3P51805 1871 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 DPRXA6NFQ7 191 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 IGHV2-70P01814 119 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 IL11P20809 199 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF818PQ6ZRF7 136 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 MMD2Q8IY49 270 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 TNFRSF18Q9Y5U5 241 aa4.52□□□□□ -1.69
SCN1A-201ENST00000303395 CENPVL1A0A0U1RR11 272 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BKO60814 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BJP06899 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BOP23527 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BBP33778 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF83P51522 516 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 RIPPLY3P57055 190 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BDP58876 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BCP62807 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST2H2BEQ16778 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 CXorf66Q5JRM2 361 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 C10orf113Q5VZT2 155 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 PTCRAQ6ISU1 281 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF645Q8N7E2 425 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 FAM222BQ8WU58 562 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 ABHD3Q8WU67 409 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BHQ93079 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BNQ99877 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H2BMQ99879 126 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 AICDAQ9GZX7 198 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 FGF22Q9HCT0 170 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 KLK13Q9UKR3 277 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 CREBBPQ92793 2442 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 KBTBD11-OT1A0A1B0GTJ5 212 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 UMODP07911 640 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 PGFP49763 221 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 FBXO46Q6PJ61 603 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 BATF2Q8N1L9 274 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 R3HDMLQ9H3Y0 253 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 C20orf141Q9NUB4 165 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 SAA2-SAA4A0A096LPE2 208 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 IGHV2-5P01817 119 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 CA6P23280 308 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 DYNLT3P51808 116 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 LY6G6FQ5SQ64 297 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 SPRED2Q7Z698 418 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 OR5AN1Q8NGI8 311 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 SLC37A2Q8TED4 501 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 ZGLP1P0C6A0 271 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 C8orf88P0DMB2 117 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 ASCL4Q6XD76 172 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 BHLHA15Q7RTS1 189 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 PRNTQ86SH4 94 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 GLRX5Q86SX6 157 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 OR4C3Q8NH37 302 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 JMJD8Q96S16 334 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 FUT9Q9Y231 359 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 MT-CO3P00414 261 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 CLDN2P57739 230 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 FAM231DQ6ZW35 169 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 DEFB132Q7Z7B7 95 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF430Q9H8G1 570 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 SLC25A15Q9Y619 301 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 IGHV3-64DA0A0J9YX35 117 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 NRG2O14511 850 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 CD5LO43866 347 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 ICOSLGO75144 302 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 LGALS1P09382 135 aaKnown RBP4.51□□□□□ -1.69
SCN1A-201ENST00000303395 BADQ92934 168 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 G6PC2Q9NQR9 355 aa4.51□□□□□ -1.69
SCN1A-201ENST00000303395 IZUMO1RA6ND01 250 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 SYNGR1O43759 233 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 FCGR3BO75015 233 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 MOSPD3O75425 235 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 MPZL1O95297 269 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 SPATA45Q537H7 98 aa4.5□□□□□ -1.69
SCN1A-201ENST00000303395 C8orf44Q96CB5 159 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms