RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 FANCD2OSQ96PS1 177 aa9.61□□□□□ -0.87
CD44-203ENST00000278386 CCL28Q9NRJ3 127 aa9.61□□□□□ -0.87
CD44-203ENST00000278386 DMRT1Q9Y5R6 373 aa9.61□□□□□ -0.87
CD44-203ENST00000278386 PLECQ15149 4684 aaKnown RBP9.6□□□□□ -0.87
CD44-203ENST00000278386 TRAV18A0A075B6X5 111 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 LOC100506127A0A0U1RQW1 187 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 TMEM213A2RRL7 107 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 MFSD2BA6NFX1 497 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 A8MWP6 167 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 SCAF4O95104 1147 aaKnown RBP9.6□□□□□ -0.87
CD44-203ENST00000278386 PPYP01298 95 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 CTRB1P17538 263 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 CBLN1P23435 193 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 SDC2P34741 201 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 BRWD1-AS2P59051 145 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 IDNKQ5T6J7 187 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 CTRB2Q6GPI1 263 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 BTNL8Q6UX41 500 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 GPHB5Q86YW7 130 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 TMEM61Q8N0U2 210 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 OR52B4Q8NGK2 314 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 OR4A5Q8NH83 315 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 AIFM2Q9BRQ8 373 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 SLC5A7Q9GZV3 580 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 BET1LQ9NYM9 111 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 MLXQ9UH92 298 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 ETV7Q9Y603 341 aa9.6□□□□□ -0.87
CD44-203ENST00000278386 IGLV11-55A0A075B6I3 123 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 TRBV7-1A0A0A6YYK4 115 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 SULT1C2O00338 296 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 CRYGCP07315 174 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 CLEC2LP0C7M8 214 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 GPR183P32249 361 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 MSMO1Q15800 293 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 TMEM17Q86X19 198 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 UXS1Q8NBZ7 420 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 OR5H6Q8NGV6 325 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 OR51H1Q8NH63 302 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 SLC25A38Q96DW6 304 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 CXorf58Q96LI9 332 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 Q9H521 79 aa9.59□□□□□ -0.87
CD44-203ENST00000278386 MEIS3P1A6NDR6 274 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 NQO2P16083 231 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 SCAND1P57086 179 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 TAS2R31P59538 309 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 OR2B8PP59922 312 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 HERV-K104P61576 105 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 AADACL3Q5VUY0 350 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 HOGA1Q86XE5 327 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 ZBTB34Q8NCN2 500 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 DMBX1Q8NFW5 382 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 GGTLC1Q9BX51 225 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 COMMD5Q9GZQ3 224 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 RNF167Q9H6Y7 350 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 IFT46Q9NQC8 304 aa9.58□□□□□ -0.88
CD44-203ENST00000278386 A0A0A6YYH2 397 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 TRAV3A0A0B4J244 114 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 IGHV3-35A0A0C4DH35 117 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 A6NJ64 397 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 CGB1A6NKQ9 187 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 CYB5BO43169 146 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 RBFOX2O43251 390 aaKnown RBP eCLIP9.57□□□□□ -0.88
CD44-203ENST00000278386 S1PR2O95136 353 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 HPRT1P00492 218 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 CLEC3BP05452 202 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 RPA2P15927 270 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 ANKRD55Q3KP44 614 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 TM4SF20Q53R12 229 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 PLET1Q6UQ28 207 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 UNQ9165/PRO28630Q6UXU0 137 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 ZNF818PQ6ZRF7 136 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 RBPMS2Q6ZRY4 209 aaKnown RBP9.57□□□□□ -0.88
CD44-203ENST00000278386 DIABLOQ9NR28 239 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 TMEM140Q9NV12 185 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 THYN1Q9P016 225 aa9.57□□□□□ -0.88
CD44-203ENST00000278386 LOC102724200A0A096LPH7 203 aaPredicted RBP9.56□□□□□ -0.88
CD44-203ENST00000278386 IGLC7A0M8Q6 106 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 UPK2O00526 184 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 CBX5P45973 191 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 ERVK-16P61578 105 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 ZNF585BQ52M93 769 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 ZNF773Q6PK81 442 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 OR1L6Q8NGR2 347 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 ZNF502Q8TBZ5 544 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 MARC2Q969Z3 335 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 QTRT1Q9BXR0 403 aaKnown RBP9.56□□□□□ -0.88
CD44-203ENST00000278386 AUNIPQ9H7T9 357 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 EHFQ9NZC4 300 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 UFC1Q9Y3C8 167 aa9.56□□□□□ -0.88
CD44-203ENST00000278386 TGOLN2O43493 480 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 RLN1P04808 185 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 NEDD8Q15843 81 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 POU2AF1Q16633 256 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 KLK9Q2XQG4 91 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 THOC7Q6I9Y2 204 aaKnown RBP9.55□□□□□ -0.88
CD44-203ENST00000278386 GDPD1Q8N9F7 314 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 OR5AP2Q8NGF4 316 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 OR10W1Q8NGF6 305 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 CD300LFQ8TDQ1 290 aa9.55□□□□□ -0.88
CD44-203ENST00000278386 SRSF8Q9BRL6 282 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms