RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RNASEH2CQ8TDP1 164 aaKnown RBP16.23■□□□□ 0.19
UPF1-201ENST00000262803 TET1Q8NFU7 2136 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 IGKV1D-43A0A0B4J1Z2 117 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 PLAUP00749 431 aa16.23■□□□□ 0.19
UPF1-201ENST00000262803 ZNF25P17030 456 aaPredicted RBP16.22■□□□□ 0.19
UPF1-201ENST00000262803 COL5A1-AS1Q5SY13 56 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 CACNG8Q8WXS5 425 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 MRAP2Q96G30 205 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 NPFFR1Q9GZQ6 430 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 SRSF12Q8WXF0 261 aaKnown RBP16.22■□□□□ 0.19
UPF1-201ENST00000262803 PLSCR2Q9NRY7 297 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 SIPA1L1O43166 1804 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 TMEM250H0YL14 139 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 CEACAM4O75871 244 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 HSPB9Q9BQS6 159 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 C1QTNF5Q9BXJ0 243 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 TGIF2-C20orf24A0A0A6YYL0 155 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 FABP2P12104 132 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 FOLR2P14207 255 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 ASIPP42127 132 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 CMC4P56277 68 aaPredicted RBP16.22■□□□□ 0.19
UPF1-201ENST00000262803 LINC01560Q8TB33 94 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 IFI27L2Q9H2X8 130 aa16.22■□□□□ 0.19
UPF1-201ENST00000262803 IL4P05112 153 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 ARL14EPLP0DKL9 152 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 HINT1P49773 126 aaPredicted RBP16.21■□□□□ 0.19
UPF1-201ENST00000262803 ACSF3Q4G176 576 aaPredicted RBP16.21■□□□□ 0.19
UPF1-201ENST00000262803 IQCF6A8MYZ5 107 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 EFEMP2O95967 443 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 MOSP00540 346 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 CECR9P0C854 216 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 PPP1R27Q86WC6 154 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 GPX4P36969 197 aaPredicted RBP16.21■□□□□ 0.19
UPF1-201ENST00000262803 MEIG1Q5JSS6 88 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 LINC00114Q6XXX2 140 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 EAF1Q96JC9 268 aaPredicted RBP16.21■□□□□ 0.19
UPF1-201ENST00000262803 HIST1H1AQ02539 215 aaPredicted RBP16.21■□□□□ 0.19
UPF1-201ENST00000262803 PLAURQ03405 335 aa16.21■□□□□ 0.19
UPF1-201ENST00000262803 CACNA1EQ15878 2313 aa16.21■□□□□ 0.18
UPF1-201ENST00000262803 K7ERU9 68 aa16.21■□□□□ 0.18
UPF1-201ENST00000262803 KBTBD11-OT1A0A1B0GTJ5 212 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 PGLYRP4Q96LB8 373 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 IGHV2OR16-5A0A0B4J2B6 119 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 NPIPB7O75200 414 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 HLA-DRB1P01911 266 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 PRELID3AQ96N28 172 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 GCHFRP30047 84 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 CYB5R2Q6BCY4 276 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 OR1P1Q8NH06 330 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 NPIPB3Q92617 1050 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 MRPL18Q9H0U6 180 aaKnown RBP16.2■□□□□ 0.18
UPF1-201ENST00000262803 ARPC1AQ92747 370 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 CBLN4Q9NTU7 201 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 NEUROG3Q9Y4Z2 214 aa16.2■□□□□ 0.18
UPF1-201ENST00000262803 MSGN1A6NI15 193 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 PRSS2P07478 247 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 ZNF362Q5T0B9 420 aaPredicted RBP16.19■□□□□ 0.18
UPF1-201ENST00000262803 CFHR1Q03591 330 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 ATP1A1-AS1Q5TC04 95 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 NR2C2APQ86WQ0 139 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 VWCEQ96DN2 955 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 C2orf88Q9BSF0 95 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 C21orf62Q9NYP8 219 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 TNFRSF18Q9Y5U5 241 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 IGLV3-12A0A075B6K2 115 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 H3BRM9 83 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 RFPL3SP0C7P2 107 aa16.19■□□□□ 0.18
UPF1-201ENST00000262803 MPTX1A8MV57 137 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 C2orf68Q2NKX9 166 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 LEAP2Q969E1 77 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 FBXL7Q9UJT9 491 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 SCGB1A1P11684 91 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 AGAP20933 346 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 TAS2R60P59551 318 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 DPH3Q96FX2 82 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 IMMP1LQ96LU5 166 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 HBBP68871 147 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 TRAV9-1A0A075B6T8 112 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 LOC102723996A0A087X1L8 192 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 C17orf100A8MU93 164 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 ZIC3O60481 467 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 FMC1Q96HJ9 113 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 SGK494Q96LW2 274 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 RTN4RQ9BZR6 473 aa16.18■□□□□ 0.18
UPF1-201ENST00000262803 MRPL14Q6P1L8 145 aaKnown RBP16.17■□□□□ 0.18
UPF1-201ENST00000262803 GPR61Q9BZJ8 451 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 UQCR10Q9UDW1 63 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 CDX1P47902 265 aaPredicted RBP16.17■□□□□ 0.18
UPF1-201ENST00000262803 BSPH1Q075Z2 132 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 ABHD17AQ96GS6 310 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 PRSS22Q9GZN4 317 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 BRCA1P38398 1863 aaKnown RBP16.17■□□□□ 0.18
UPF1-201ENST00000262803 PLXNA1Q9UIW2 1896 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 SNRNP200O75643 2136 aaKnown RBP16.17■□□□□ 0.18
UPF1-201ENST00000262803 OTOFQ9HC10 1997 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 ANKRD36A6QL64 1941 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 LEPP41159 167 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 OR10S1Q8NGN2 331 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 SDK2Q58EX2 2172 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 SIGLEC12Q96PQ1 595 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms