RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 JOSD1Q15040 202 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 STK38Q15208 465 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 OR4D1Q15615 310 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 KISS1Q15726 138 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TNFAIP8L3Q5GJ75 292 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 SAPCD1Q5SSQ6 148 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 C1orf194Q5T5A4 169 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TEX36Q5VZQ5 186 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 PDPK2PQ6A1A2 396 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TTC33Q6PID6 262 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 SCGB1D4Q6XE38 83 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 Q6ZQT0 140 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 RPS19BP1Q86WX3 136 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 ST13P4Q8IZP2 240 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 C12orf29Q8N999 325 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 SPERTQ8NA61 448 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 OR52E4Q8NGH9 312 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 OR5L1Q8NGL2 311 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 OR13C8Q8NGS7 320 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 STOML3Q8TAV4 291 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 ZNF418Q8TF45 676 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 Q8WTZ3 238 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 ACOT12Q8WYK0 555 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 AQP3Q92482 292 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TESCQ96BS2 214 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TLCD1Q96CP7 247 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 MS4A6EQ96DS6 147 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 GNPNAT1Q96EK6 184 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 NABP2Q9BQ15 211 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 MRPL57Q9BQC6 102 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TMEM70Q9BUB7 260 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 BBS2Q9BXC9 721 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 CST9LQ9H4G1 147 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 PARVAQ9NVD7 372 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 COMMD9Q9P000 198 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 EMC3Q9P0I2 261 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 RABL2AQ9UBK7 228 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 NAT8Q9UHE5 227 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 TP53TG1Q9Y2A0 90 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 COQ4Q9Y3A0 265 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 PCYT1BQ9Y5K3 369 aaPredicted RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 SNURFQ9Y675 71 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 BZW2Q9Y6E2 419 aaKnown RBP-0.12□□□□□ -2.43
VPS35-212ENST00000640313 COL4A5P29400 1685 aa-0.12□□□□□ -2.43
VPS35-212ENST00000640313 DNMT1P26358 1616 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 WDR90Q96KV7 1748 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 MYO5BQ9ULV0 1848 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 PTPRZ1P23471 2315 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HECTD4Q9Y4D8 3996 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 EML5Q05BV3 1969 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TNRC6AQ8NDV7 1962 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CHD5Q8TDI0 1954 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CPAMD8Q8IZJ3 1885 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 GLI3P10071 1580 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 STARD9Q9P2P6 4700 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 REREQ9P2R6 1566 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 IGKV1D-42A0A075B6H8 117 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 A0A087WX48 190 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TEX50A0A1B0GTY4 177 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TINCRA0A1B0GVN0 87 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TMEM269A0A1B0GVZ9 245 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 METTL15A6NJ78 407 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 C2orf70A6NJV1 201 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 K7EIL1 84 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 NDUFS8O00217 210 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 LST1O00453 97 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SDCBPO00560 298 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 COX7A2LO14548 114 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 COPEO14579 308 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 ITGB1BP1O14713 200 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 LEPROTO15243 131 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 ATP8B1O43520 1251 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CREBL2O60519 120 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 KRT75O95678 551 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SNAP29O95721 258 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HLA-DRAP01903 254 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 PMP2P02689 132 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 PPBPP02775 128 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HLA-DQB2P05538 268 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CTSDP07339 412 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 IVLP07476 585 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 MSMBP08118 114 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 LINC00614P0C842 121 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 UBBP0CG47 229 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SYT1P21579 422 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HLA-DMBP28068 263 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 RCVRNP35243 200 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 REG1BP48304 166 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CDK9P50750 372 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 ZNF80P51504 273 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 EFNA4P52798 201 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 FXYD2P54710 66 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CLDN12P56749 244 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 RAB4BP61018 213 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 POLR2GP62487 172 aaKnown RBP eCLIP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 BTN3A2P78410 334 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 GNA12Q03113 381 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 AKR1C1Q04828 323 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 STX3Q13277 289 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SLAMF1Q13291 335 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms