RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 EWSR1Q01844 656 aaKnown RBP eCLIP14.5□□□□□ -0.09
CLN3-262ENST00000637699 OR2B11Q5JQS5 317 aa14.5□□□□□ -0.09
CLN3-262ENST00000637699 UBE2UQ5VVX9 321 aa14.5□□□□□ -0.09
CLN3-262ENST00000637699 H1FOOQ8IZA3 346 aaPredicted RBP14.5□□□□□ -0.09
CLN3-262ENST00000637699 VKORC1L1Q8N0U8 176 aa14.5□□□□□ -0.09
CLN3-262ENST00000637699 UXS1Q8NBZ7 420 aa14.5□□□□□ -0.09
CLN3-262ENST00000637699 FYTTD1Q96QD9 318 aaKnown RBP14.5□□□□□ -0.09
CLN3-262ENST00000637699 TMEM213A2RRL7 107 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 DPPA5A6NC42 116 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 NUPR2A6NF83 97 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 TEX22C9J3V5 150 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 FAM106AQ4KMX7 169 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 TM4SF20Q53R12 229 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 C22orf42Q6IC83 251 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 OR10R2Q8NGX6 335 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 CCDC140Q96MF4 163 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 Q9H521 79 aa14.49□□□□□ -0.09
CLN3-262ENST00000637699 IGKV1D-8A0A087WSZ0 117 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 IFITM5A6NNB3 132 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 PDCD5O14737 125 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 IL6RP08887 468 aaPredicted RBP14.48□□□□□ -0.09
CLN3-262ENST00000637699 TALDO1P37837 337 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 ANKRD55Q3KP44 614 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 CEMP1Q6PRD7 247 aaPredicted RBP14.48□□□□□ -0.09
CLN3-262ENST00000637699 BTNL8Q6UX41 500 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 KCTD9Q7L273 389 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 NR2C2APQ86WQ0 139 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 OR51E2Q9H255 320 aa14.48□□□□□ -0.09
CLN3-262ENST00000637699 NPIPB5A8MRT5 1133 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 E7EUB6 86 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 MFNGO00587 321 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 RAB3BP20337 219 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 GALP22466 123 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 GADD45AP24522 165 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 MYL9P24844 172 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 PSMB9P28065 219 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 RPL27AP46776 148 aaKnown RBP14.47□□□□□ -0.09
CLN3-262ENST00000637699 RPL30P62888 115 aaKnown RBP14.47□□□□□ -0.09
CLN3-262ENST00000637699 ARFRP1Q13795 201 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 LYG2Q86SG7 212 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 RPP25LQ8N5L8 163 aaKnown RBP14.47□□□□□ -0.09
CLN3-262ENST00000637699 FANCD2OSQ96PS1 177 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 YTHDF1Q9BYJ9 559 aaKnown RBP14.47□□□□□ -0.09
CLN3-262ENST00000637699 PRELID3BQ9Y3B1 194 aa14.47□□□□□ -0.09
CLN3-262ENST00000637699 SMIM30A4D0T7 59 aa14.46□□□□□ -0.09
CLN3-262ENST00000637699 A8MWP6 167 aa14.46□□□□□ -0.09
CLN3-262ENST00000637699 AREGP15514 252 aa14.46□□□□□ -0.09
CLN3-262ENST00000637699 HIST1H1DP16402 221 aaKnown RBP14.46□□□□□ -0.09
CLN3-262ENST00000637699 RANBP1P43487 201 aa14.46□□□□□ -0.09
CLN3-262ENST00000637699 ZNF645Q8N7E2 425 aa14.46□□□□□ -0.09
CLN3-262ENST00000637699 EEF1AKMT3Q96AZ1 226 aa14.46□□□□□ -0.09
CLN3-262ENST00000637699 SLC2A9Q9NRM0 540 aa14.46□□□□□ -0.09
CLN3-262ENST00000637699 MRPS7Q9Y2R9 242 aaKnown RBP14.46□□□□□ -0.09
CLN3-262ENST00000637699 A0A1B0GW64 132 aa14.45□□□□□ -0.1
CLN3-262ENST00000637699 RAB27BO00194 218 aa14.45□□□□□ -0.1
CLN3-262ENST00000637699 SPRY2O43597 315 aa14.45□□□□□ -0.1
CLN3-262ENST00000637699 TNFRSF9Q07011 255 aa14.45□□□□□ -0.1
CLN3-262ENST00000637699 OR4A47Q6IF82 309 aa14.45□□□□□ -0.1
CLN3-262ENST00000637699 RBPMS2Q6ZRY4 209 aaKnown RBP14.45□□□□□ -0.1
CLN3-262ENST00000637699 OR2A7Q96R45 310 aa14.45□□□□□ -0.1
CLN3-262ENST00000637699 CENPOQ9BU64 300 aa14.45□□□□□ -0.1
CLN3-262ENST00000637699 TXNL4BQ9NX01 149 aaKnown RBP14.45□□□□□ -0.1
CLN3-262ENST00000637699 ELF5Q9UKW6 265 aaPredicted RBP14.45□□□□□ -0.1
CLN3-262ENST00000637699 KBTBD11O94819 623 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 DHFRP00374 187 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 REG1AP05451 166 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 ZNF735P0CB33 412 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 NFYAP23511 347 aaPredicted RBP14.44□□□□□ -0.1
CLN3-262ENST00000637699 PSMB6P28072 239 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 FGF9P31371 208 aaPredicted RBP14.44□□□□□ -0.1
CLN3-262ENST00000637699 BMI1P35226 326 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 DEFB135Q30KP9 77 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 ZNF585BQ52M93 769 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 ZNF773Q6PK81 442 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 UNQ9165/PRO28630Q6UXU0 137 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 Q6ZS49 121 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 WFDC3Q8IUB2 231 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 OR1L6Q8NGR2 347 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 VSTM2AQ8TAG5 236 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 TMEM167AQ8TBQ9 72 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 FCGR1BQ92637 280 aa14.44□□□□□ -0.1
CLN3-262ENST00000637699 KLK5Q9Y337 293 aaPredicted RBP14.44□□□□□ -0.1
CLN3-262ENST00000637699 RBMX2Q9Y388 322 aaKnown RBP14.44□□□□□ -0.1
CLN3-262ENST00000637699 CLEC3BP05452 202 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 CRYGCP07315 174 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 DEFA4P12838 97 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 MYOD1P15172 320 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 CD36P16671 472 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 RAB6AP20340 208 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 APOC4P55056 127 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 Q6ZWC4 215 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 PUSL1Q8N0Z8 303 aaKnown RBP14.43□□□□□ -0.1
CLN3-262ENST00000637699 TCTEX1D2Q8WW35 142 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 UBQLN2Q9UHD9 624 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 SPATA2Q9UM82 520 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 TP53TG1Q9Y2A0 90 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 OR2W1Q9Y3N9 320 aa14.43□□□□□ -0.1
CLN3-262ENST00000637699 TRAV25A0A0B4J276 109 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 IGHV3-35A0A0C4DH35 117 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 MFSD2BA6NFX1 497 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms