RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PPP5CP53041 499 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 UCP3P55916 312 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 SSBP2P81877 361 aaPredicted RBP14.94□□□□□ -0.02
CLN3-260ENST00000637578 ECSCRQ19T08 205 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 KCTD9Q7L273 389 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 PPP1R27Q86WC6 154 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 ZBTB34Q8NCN2 500 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 MRGPRFQ96AM1 343 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 HSD17B10Q99714 261 aaKnown RBP14.94□□□□□ -0.02
CLN3-260ENST00000637578 A0A1W2PN81 502 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 SRRM4A7MD48 611 aaKnown RBP14.94□□□□□ -0.02
CLN3-260ENST00000637578 ARPC1BO15143 372 aaKnown RBP14.94□□□□□ -0.02
CLN3-260ENST00000637578 PGAM2P15259 253 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 FAUP35544 74 aaKnown RBP14.94□□□□□ -0.02
CLN3-260ENST00000637578 CHRNA7P36544 502 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 INPP1P49441 399 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 ZNF66Q6ZN08 573 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 OR11H1Q8NG94 326 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 OR5M8Q8NGP6 311 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 TCTEX1D2Q8WW35 142 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 BORCS5Q969J3 196 aa14.94□□□□□ -0.02
CLN3-260ENST00000637578 FAM103A1Q9BTL3 118 aaKnown RBP14.94□□□□□ -0.02
CLN3-260ENST00000637578 GPR31O00270 319 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 HOXD3P31249 432 aaPredicted RBP14.93□□□□□ -0.02
CLN3-260ENST00000637578 FXYD3Q14802 87 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 RTL8BQ17RB0 113 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 PHLDA2Q53GA4 152 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 OR2B11Q5JQS5 317 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 ASPHD1Q5U4P2 390 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 LPCAT3Q6P1A2 487 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 SLC38A6Q8IZM9 456 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 LFNGQ8NES3 379 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 DEDD2Q8WXF8 326 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 HARBI1Q96MB7 349 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 PRRT1Q99946 306 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 RSRP1Q9BUV0 290 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 CCDC32Q9BV29 185 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 WDR12Q9GZL7 423 aaKnown RBP14.93□□□□□ -0.02
CLN3-260ENST00000637578 SLC2A8Q9NY64 477 aa14.93□□□□□ -0.02
CLN3-260ENST00000637578 K7EIL1 84 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 PJVKQ0ZLH3 352 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 ZNF846Q147U1 533 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 MRGPRG-AS1Q2M3A8 158 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 UNQ5815/PRO19632Q6UWF5 114 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 IDO2Q6ZQW0 420 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 CMTM1Q8IZ96 169 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 OR13C8Q8NGS7 320 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 OR51H1Q8NH63 302 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 ARPC1AQ92747 370 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 SCP2D1Q9UJQ7 156 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 PRELID3BQ9Y3B1 194 aa14.92□□□□□ -0.02
CLN3-260ENST00000637578 LINC00854A0A1B0GVQ3 168 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 SHOXO15266 292 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 FCGR3BO75015 233 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 PGLYRP1O75594 196 aaPredicted RBP14.91□□□□□ -0.02
CLN3-260ENST00000637578 RLN1P04808 185 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 PI3P19957 117 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 CD40LGP29965 261 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 BRWD1-AS2P59051 145 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 GNB1P62873 340 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 CBX3Q13185 183 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 OR1N2Q8NGR9 330 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 MARCH1Q8TCQ1 289 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 ABHD5Q8WTS1 349 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 DPF1Q92782 380 aa14.91□□□□□ -0.02
CLN3-260ENST00000637578 WI2-2373I1.2A0A1W2PRP0 233 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 CRYZL1O95825 349 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 RAB25P57735 213 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 ZNF616Q08AN1 781 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 TEX45Q8NA69 505 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 OSR1Q8TAX0 266 aaPredicted RBP14.9□□□□□ -0.02
CLN3-260ENST00000637578 SLC2A9Q9NRM0 540 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 OR8U8P0C7N1 319 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 UBE2KP61086 200 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 CATR1Q13166 79 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 CASTOR1Q8WTX7 329 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 TMEM68Q96MH6 324 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 SLA2Q9H6Q3 261 aa14.9□□□□□ -0.02
CLN3-260ENST00000637578 ECI1P42126 302 aa14.89□□□□□ -0.03
CLN3-260ENST00000637578 SURF2Q15527 256 aaPredicted RBP14.89□□□□□ -0.03
CLN3-260ENST00000637578 GRPEL2Q8TAA5 225 aa14.89□□□□□ -0.03
CLN3-260ENST00000637578 ZFAND1Q8TCF1 268 aa14.89□□□□□ -0.03
CLN3-260ENST00000637578 ZNF486Q96H40 463 aaPredicted RBP14.89□□□□□ -0.03
CLN3-260ENST00000637578 OR5B12Q96R08 314 aa14.89□□□□□ -0.03
CLN3-260ENST00000637578 ZMAT5Q9UDW3 170 aaKnown RBP14.89□□□□□ -0.03
CLN3-260ENST00000637578 RAMP3O60896 148 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 BRI3O95415 125 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 CTSDP07339 412 aaPredicted RBP14.88□□□□□ -0.03
CLN3-260ENST00000637578 LGALS1P09382 135 aaKnown RBP14.88□□□□□ -0.03
CLN3-260ENST00000637578 S100GP29377 79 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 KIR2DS2P43631 304 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 PIGPP57054 158 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 C9orf66Q5T8R8 295 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 TBC1D26Q86UD7 250 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 SPAG16Q8N0X2 631 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 OR4S2Q8NH73 311 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 RHOVQ96L33 236 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 ALX4Q9H161 411 aaPredicted RBP14.88□□□□□ -0.03
CLN3-260ENST00000637578 GPR132Q9UNW8 380 aa14.88□□□□□ -0.03
CLN3-260ENST00000637578 H3BUA1 57 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms