RNA–Protein interactions for RNA: ENST00000637329.1

CLN6-219, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,204 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-219ENST00000637329 MS4A7Q9GZW8 240 aaPredicted RBP12.4□□□□□ -0.42
CLN6-219ENST00000637329 LYRM2Q9NU23 88 aaPredicted RBP12.4□□□□□ -0.42
CLN6-219ENST00000637329 FOXA2Q9Y261 457 aaPredicted RBP12.4□□□□□ -0.42
CLN6-219ENST00000637329 BOLA1Q9Y3E2 137 aa12.4□□□□□ -0.42
CLN6-219ENST00000637329 KANTRA0A1W2PQU2 76 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 IL6RP08887 468 aaPredicted RBP12.39□□□□□ -0.43
CLN6-219ENST00000637329 OR9G9P0C7N8 305 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 CD1BP29016 333 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 RPL12P30050 165 aaKnown RBP12.39□□□□□ -0.43
CLN6-219ENST00000637329 UBE2KP61086 200 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 RELBQ01201 579 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 SSX9Q7RTT3 188 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 PUSL1Q8N0Z8 303 aaKnown RBP12.39□□□□□ -0.43
CLN6-219ENST00000637329 LINC01356Q8N9X3 169 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 CIB3Q96Q77 187 aaPredicted RBP12.39□□□□□ -0.43
CLN6-219ENST00000637329 TMEM14BQ9NUH8 114 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 PRNDQ9UKY0 176 aa12.39□□□□□ -0.43
CLN6-219ENST00000637329 J3QLI3 93 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 TAAR5O14804 337 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 RGS13O14921 159 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 TSC22D2O75157 780 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 RBMXL2O75526 392 aaKnown RBP12.38□□□□□ -0.43
CLN6-219ENST00000637329 KBTBD11O94819 623 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 SCAF4O95104 1147 aaKnown RBP12.38□□□□□ -0.43
CLN6-219ENST00000637329 SPDEFO95238 335 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 SAA1P0DJI8 122 aaPredicted RBP12.38□□□□□ -0.43
CLN6-219ENST00000637329 HKR1P10072 659 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 SPCS3P61009 180 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 RPL23AP62750 156 aaKnown RBP12.38□□□□□ -0.43
CLN6-219ENST00000637329 PRB3Q04118 309 aaPredicted RBP12.38□□□□□ -0.43
CLN6-219ENST00000637329 BAXQ07812 192 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 VMA21Q3ZAQ7 101 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 MOB3BQ86TA1 216 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 OR2C3Q8N628 320 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 CFHR4Q92496 578 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 MALSU1Q96EH3 234 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 TSNAXQ99598 290 aaKnown RBP12.38□□□□□ -0.43
CLN6-219ENST00000637329 ARPC5LQ9BPX5 153 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 SLC25A31Q9H0C2 315 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 MAGT1Q9H0U3 335 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 FKBP11Q9NYL4 201 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 ZNF257Q9Y2Q1 563 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 AUP1Q9Y679 476 aa12.38□□□□□ -0.43
CLN6-219ENST00000637329 MSGN1A6NI15 193 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 TIMM23O14925 209 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 CHST1O43916 411 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 AP2S1P53680 142 aaPredicted RBP12.37□□□□□ -0.43
CLN6-219ENST00000637329 OR2B8PP59922 312 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 RPS16P62249 146 aaKnown RBP12.37□□□□□ -0.43
CLN6-219ENST00000637329 LDLRAD2Q5SZI1 272 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 LHFPL4Q7Z7J7 247 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 SLC51BQ86UW2 128 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 KRTAP1-3Q8IUG1 177 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 VKORC1L1Q8N0U8 176 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 TMEM167AQ8TBQ9 72 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 SMIM8Q96KF7 97 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 REG4Q9BYZ8 158 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 RBKSQ9H477 322 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 ARID1AO14497 2285 aa12.37□□□□□ -0.43
CLN6-219ENST00000637329 UPK2O00526 184 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 NPFFO15130 113 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 NXPH3O95157 252 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 VENTXO95231 258 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 IGLV2-23P01705 113 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 CAV2P51636 162 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 UBA52P62987 128 aaKnown RBP12.36□□□□□ -0.43
CLN6-219ENST00000637329 IFITM2Q01629 132 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 TEX45Q8NA69 505 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 OR5B3Q8NH48 314 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 DTD1Q8TEA8 209 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 CLCC1Q96S66 551 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 TMUB1Q9BVT8 246 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 QTRT1Q9BXR0 403 aaKnown RBP12.36□□□□□ -0.43
CLN6-219ENST00000637329 ZC4H2Q9NQZ6 224 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 HIF1ANQ9NWT6 349 aa12.36□□□□□ -0.43
CLN6-219ENST00000637329 VPS13CQ709C8 3753 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 CENPVL3A0A0U1RRI6 287 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 SRRM4A7MD48 611 aaKnown RBP12.35□□□□□ -0.43
CLN6-219ENST00000637329 RNF223E7ERA6 249 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 TMEM50AO95807 157 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 IFNA17P01571 189 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 SAA4P35542 130 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 PAX9P55771 341 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 EWSR1Q01844 656 aaKnown RBP eCLIP12.35□□□□□ -0.437e-6■■□□□ 12.2
CLN6-219ENST00000637329 ZNF767PQ75MW2 155 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 STX12Q86Y82 276 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 STOML3Q8TAV4 291 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 Q96MF0 132 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 FOXC2Q99958 501 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 NUP50Q9UKX7 468 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 HILPDAQ9Y5L2 63 aa12.35□□□□□ -0.43
CLN6-219ENST00000637329 IGHV3-72A0A0B4J1Y9 119 aa12.34□□□□□ -0.43
CLN6-219ENST00000637329 TRAV40A0A0B4J280 105 aa12.34□□□□□ -0.43
CLN6-219ENST00000637329 IGHV1-69DA0A0B4J2H0 117 aa12.34□□□□□ -0.43
CLN6-219ENST00000637329 CEBPZOSA8MTT3 80 aa12.34□□□□□ -0.43
CLN6-219ENST00000637329 IGHV1-69P01742 117 aa12.34□□□□□ -0.43
CLN6-219ENST00000637329 HSPE1P61604 102 aaKnown RBP12.34□□□□□ -0.43
CLN6-219ENST00000637329 RPL8P62917 257 aaKnown RBP12.34□□□□□ -0.43
CLN6-219ENST00000637329 EIF5AP63241 154 aaKnown RBP12.34□□□□□ -0.43
CLN6-219ENST00000637329 PDZD9Q8IXQ8 264 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms