RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 OPCMLQ14982 345 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 CCDC144NLQ6NUI1 221 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 ZNF429Q86V71 674 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 DYNAPQ8N1N2 210 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 MALSU1Q96EH3 234 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 RAB40CQ96S21 281 aa14.84□□□□□ -0.03
CLN3-254ENST00000637050 QTRT1Q9BXR0 403 aaKnown RBP14.84□□□□□ -0.03
CLN3-254ENST00000637050 UPK2O00526 184 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 NPFFO15130 113 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 RBMXL2O75526 392 aaKnown RBP14.83□□□□□ -0.04
CLN3-254ENST00000637050 RPL12P30050 165 aaKnown RBP14.83□□□□□ -0.04
CLN3-254ENST00000637050 OR2B8PP59922 312 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 UBE2KP61086 200 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 IFITM2Q01629 132 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 SSX2Q16385 188 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 MAPK1IP1LQ8NDC0 245 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 RITA1Q96K30 269 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 RBKSQ9H477 322 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 C7orf69Q9H7B7 122 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 NAV2Q8IVL1 2488 aa14.83□□□□□ -0.04
CLN3-254ENST00000637050 C15orf61A6NNL5 157 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 MED6O75586 246 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 M6PRP20645 277 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 SAA4P35542 130 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 VAMP2P63027 116 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 PDLIM3Q53GG5 364 aaPredicted RBP14.82□□□□□ -0.04
CLN3-254ENST00000637050 GPR157Q5UAW9 335 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 OR52E5Q8NH55 327 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 RNF5Q99942 180 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 GON7Q9BXV9 100 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 TMEM14BQ9NUH8 114 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 CACFD1Q9UGQ2 172 aa14.82□□□□□ -0.04
CLN3-254ENST00000637050 FOXA2Q9Y261 457 aaPredicted RBP14.82□□□□□ -0.04
CLN3-254ENST00000637050 IGHV1-69DA0A0B4J2H0 117 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 KBTBD11O94819 623 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 VENTXO95231 258 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 IGHV1-69P01742 117 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 IGHV4-31P0DP07 118 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 TMEM249Q2WGJ8 235 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 PIP4P2Q8N4L2 257 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 OR2C3Q8N628 320 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 VSTM2AQ8TAG5 236 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 LYRM2Q9NU23 88 aaPredicted RBP14.81□□□□□ -0.04
CLN3-254ENST00000637050 WSB1Q9Y6I7 421 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 WNK2Q9Y3S1 2297 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 GPR137BO60478 399 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 TSC22D2O75157 780 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 PAX6P26367 422 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 TAS2R30P59541 319 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 SPCS3P61009 180 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 VMA21Q3ZAQ7 101 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 OR4A5Q8NH83 315 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 TMEM167AQ8TBQ9 72 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 SMIM8Q96KF7 97 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 FOXC2Q99958 501 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 PRNDQ9UKY0 176 aa14.81□□□□□ -0.04
CLN3-254ENST00000637050 TRAV40A0A0B4J280 105 aa14.8□□□□□ -0.04
CLN3-254ENST00000637050 J3QLI3 93 aa14.8□□□□□ -0.04
CLN3-254ENST00000637050 BCL2L11O43521 198 aa14.8□□□□□ -0.04
CLN3-254ENST00000637050 SLA2Q9H6Q3 261 aa14.8□□□□□ -0.04
CLN3-254ENST00000637050 CR1P17927 2039 aa14.8□□□□□ -0.04
CLN3-254ENST00000637050 FAM24AA6NFZ4 105 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 TGFAP01135 160 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 IFNA17P01571 189 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 IAPPP10997 89 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 CAV2P51636 162 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 RPL23AP62750 156 aaKnown RBP14.79□□□□□ -0.04
CLN3-254ENST00000637050 TMEM252Q8N6L7 170 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 TEX45Q8NA69 505 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 WFDC11Q8NEX6 87 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 DTD1Q8TEA8 209 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 TSNAXQ99598 290 aaKnown RBP14.79□□□□□ -0.04
CLN3-254ENST00000637050 ZNF257Q9Y2Q1 563 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 VPS13CQ709C8 3753 aa14.79□□□□□ -0.04
CLN3-254ENST00000637050 KANTRA0A1W2PQU2 76 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 IGSF23A1L1A6 192 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 SLC25A17O43808 307 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 AVPP01185 164 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 CRYGBP07316 175 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 FGF2P09038 288 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 HSPE1P61604 102 aaKnown RBP14.78□□□□□ -0.04
CLN3-254ENST00000637050 PSG5Q15238 335 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 ZDHHC16Q969W1 377 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 SLC25A31Q9H0C2 315 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 ZC4H2Q9NQZ6 224 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 FKBP11Q9NYL4 201 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 PSENENQ9NZ42 101 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 TCF19Q9Y242 345 aa14.78□□□□□ -0.04
CLN3-254ENST00000637050 CEBPZOSA8MTT3 80 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 MOSP00540 346 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 IGKV1D-33P01593 117 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 IGKV1-33P01594 117 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 CNTFRP26992 372 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 EWSR1Q01844 656 aaKnown RBP eCLIP14.77□□□□□ -0.04
CLN3-254ENST00000637050 EBI3Q14213 229 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 RUSC1-AS1Q66K80 236 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 CIB3Q96Q77 187 aaPredicted RBP14.77□□□□□ -0.04
CLN3-254ENST00000637050 NUP50Q9UKX7 468 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 OR51B2Q9Y5P1 312 aa14.77□□□□□ -0.04
CLN3-254ENST00000637050 PDZD2O15018 2839 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms