RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 LHX4Q969G2 390 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 PSMG3-AS1Q96PY0 264 aa8.57□□□□□ -1.04
CLN3-248ENST00000636355 TSNAXQ99598 290 aaKnown RBP8.57□□□□□ -1.04
CLN3-248ENST00000636355 MS4A7Q9GZW8 240 aaPredicted RBP8.57□□□□□ -1.04
CLN3-248ENST00000636355 A0A1W2PPI3 338 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 INS-IGF2F8WCM5 200 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 H7C2Y5 167 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 TOX4O94842 621 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 TMEM50AO95807 157 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 OR9G9P0C7N8 305 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 SAA1P0DJI8 122 aaPredicted RBP8.56□□□□□ -1.04
CLN3-248ENST00000636355 COX7A1P24310 79 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 CD1BP29016 333 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 DVL1P1P54792 670 aaPredicted RBP8.56□□□□□ -1.04
CLN3-248ENST00000636355 PAX9P55771 341 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 RIPPLY3P57055 190 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 RAB14P61106 215 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 ARF6P62330 175 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 LCN2P80188 198 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 CLLU1Q5K131 121 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 HCP5Q6MZN7 132 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 PRSS57Q6UWY2 283 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 TMEM14EPQ6UXP3 125 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 MRPL41Q8IXM3 137 aaKnown RBP8.56□□□□□ -1.04
CLN3-248ENST00000636355 PERPQ96FX8 193 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 PARD6GQ9BYG4 376 aaPredicted RBP8.56□□□□□ -1.04
CLN3-248ENST00000636355 MAGT1Q9H0U3 335 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 ARV1Q9H2C2 271 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 SLC25A32Q9H2D1 315 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 SIRT7Q9NRC8 400 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 CYTL1Q9NRR1 136 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 ZNRD1Q9P1U0 126 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 INSIG2Q9Y5U4 225 aa8.56□□□□□ -1.04
CLN3-248ENST00000636355 TET2Q6N021 2002 aaPredicted RBP8.56□□□□□ -1.04
CLN3-248ENST00000636355 IGHV4-30-2A0A087WSY4 118 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 TRAV20A0A0B4J274 112 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 IGHV4-61A0A0C4DH41 118 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 IGSF23A1L1A6 192 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 UPK2O00526 184 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 MAS1LP35410 378 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 LINC00205P59089 165 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 HSPE1P61604 102 aaKnown RBP8.55□□□□□ -1.04
CLN3-248ENST00000636355 IZUMO4Q1ZYL8 232 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 CLEC12BQ2HXU8 276 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 DEFB113Q30KQ7 82 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 TEX45Q8NA69 505 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 OR1S2Q8NGQ3 325 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 PINX1Q96BK5 328 aaKnown RBP8.55□□□□□ -1.04
CLN3-248ENST00000636355 ATP5SQ99766 215 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 RBKSQ9H477 322 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 PSENENQ9NZ42 101 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 NUP50Q9UKX7 468 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 TCF19Q9Y242 345 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 STRAPQ9Y3F4 350 aaKnown RBP8.55□□□□□ -1.04
CLN3-248ENST00000636355 TNCP24821 2201 aa8.55□□□□□ -1.04
CLN3-248ENST00000636355 ARHGAP32A7KAX9 2087 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 RPS10-NUDT3A0A1W2PQS6 291 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 CEBPZOSA8MTT3 80 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 B4DSR2 109 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 RNASEK-C17orf49H0YIS7 233 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 CFDP00746 253 aaPredicted RBP8.54□□□□□ -1.04
CLN3-248ENST00000636355 IFNA17P01571 189 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 MSMBP08118 114 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 REG1BP48304 166 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 LGALS4P56470 323 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 OR2B8PP59922 312 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 RPL8P62917 257 aaKnown RBP8.54□□□□□ -1.04
CLN3-248ENST00000636355 PRCDQ00LT1 54 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 PAX8Q06710 450 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 ATP6V1FQ16864 119 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 SSX9Q7RTT3 188 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 GNPNAT1Q96EK6 184 aaPredicted RBP8.54□□□□□ -1.04
CLN3-248ENST00000636355 TBX15Q96SF7 602 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 QTRT1Q9BXR0 403 aaKnown RBP8.54□□□□□ -1.04
CLN3-248ENST00000636355 HIPK2Q9H2X6 1198 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 MED9Q9NWA0 146 aa8.54□□□□□ -1.04
CLN3-248ENST00000636355 ABCA12Q86UK0 2595 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 TACC2O95359 2948 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 A0A096LNT2 108 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 A0A1W2PN81 502 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 FAM24AA6NFZ4 105 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 FAM157AC9JC47 383 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 FNDC10F2Z333 226 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 J3QLI3 93 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 SOX15O60248 233 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 VENTXO95231 258 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 IGLV2-23P01705 113 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 SEC11BP0C7V7 166 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 CHRNA7P36544 502 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 HTR2BP41595 481 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 VDAC2P45880 294 aaPredicted RBP8.53□□□□□ -1.04
CLN3-248ENST00000636355 HOXA1P49639 335 aaPredicted RBP8.53□□□□□ -1.04
CLN3-248ENST00000636355 RAB5CP51148 216 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 RPS16P62249 146 aaKnown RBP8.53□□□□□ -1.04
CLN3-248ENST00000636355 LOXL1Q08397 574 aaPredicted RBP8.53□□□□□ -1.04
CLN3-248ENST00000636355 RPL7L1Q6DKI1 246 aaKnown RBP8.53□□□□□ -1.04
CLN3-248ENST00000636355 ALKAL2Q6UX46 152 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 HSD17B13Q7Z5P4 300 aaPredicted RBP8.53□□□□□ -1.04
CLN3-248ENST00000636355 MMD2Q8IY49 270 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 VKORC1L1Q8N0U8 176 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms