RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TRIM16LQ309B1 348 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 OR4A47Q6IF82 309 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 TMED4Q7Z7H5 227 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 OR5AU1Q8NGC0 362 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 GRPEL2Q8TAA5 225 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 TMEM167AQ8TBQ9 72 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 TP53RKQ96S44 253 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 ZNF430Q9H8G1 570 aaPredicted RBP15.06■□□□□ 0
SQSTM1-216ENST00000626660 BET1LQ9NYM9 111 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 KCNIP3Q9Y2W7 256 aa15.06■□□□□ 0
SQSTM1-216ENST00000626660 PLA2G10O15496 165 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 ATG12O94817 140 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 NDUFB6O95139 128 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 KRASP01116 189 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 NDPQ00604 133 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 DHODHQ02127 395 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 TMEM267Q0VDI3 215 aaPredicted RBP15.05■□□□□ -0
SQSTM1-216ENST00000626660 SP6Q3SY56 376 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 ADAD2Q8NCV1 583 aaKnown RBP15.05■□□□□ -0
SQSTM1-216ENST00000626660 OR4X2Q8NGF9 303 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 TMEM140Q9NV12 185 aa15.05■□□□□ -0
SQSTM1-216ENST00000626660 TRAV41A0A0B4J266 112 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 FBXO24O75426 580 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 OR5AC1P0C628 307 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 UCP1P25874 307 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 MAS1LP35410 378 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 G6PCP35575 357 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 RPL8P62917 257 aaKnown RBP15.04■□□□□ -0
SQSTM1-216ENST00000626660 ECSCRQ19T08 205 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 MZT2BQ6NZ67 158 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 CENPSQ8N2Z9 138 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 SGMS2Q8NHU3 365 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 TMEM230Q96A57 120 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 TMEM222Q9H0R3 208 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 WSB1Q9Y6I7 421 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 NBEAL1Q6ZS30 2694 aa15.04■□□□□ -0
SQSTM1-216ENST00000626660 UPK2O00526 184 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 ARPC1BO15143 372 aaKnown RBP15.03■□□□□ -0
SQSTM1-216ENST00000626660 ANXA3P12429 323 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 BTCP35070 178 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 CRIP2P52943 208 aaPredicted RBP15.03■□□□□ -0
SQSTM1-216ENST00000626660 KRTAP10-3P60369 221 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 MRGPRG-AS1Q2M3A8 158 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 ZNF329Q86UD4 541 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 CADM3Q8N126 398 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 COMMD1Q8N668 190 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 C11orf44Q8N8P7 122 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 WIPF2Q8TF74 440 aaPredicted RBP15.03■□□□□ -0
SQSTM1-216ENST00000626660 TSC22D3Q99576 134 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 CITED1Q99966 193 aa15.03■□□□□ -0
SQSTM1-216ENST00000626660 FAM103A1Q9BTL3 118 aaKnown RBP15.03■□□□□ -0
SQSTM1-216ENST00000626660 SNAPC5O75971 98 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 HLA-GP17693 338 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 AKR1C2P52895 323 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 SRSF4Q08170 494 aaKnown RBP15.02■□□□□ -0
SQSTM1-216ENST00000626660 ASAH1Q13510 395 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 TMEM128Q5BJH2 165 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 UNQ5815/PRO19632Q6UWF5 114 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 H2BFWTQ7Z2G1 175 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 SRSF12Q8WXF0 261 aaKnown RBP15.02■□□□□ -0
SQSTM1-216ENST00000626660 GALNT14Q96FL9 552 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 SEC22AQ96IW7 307 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 PHB2Q99623 299 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 FBXO7Q9Y3I1 522 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 NUBP2Q9Y5Y2 271 aa15.02■□□□□ -0
SQSTM1-216ENST00000626660 TET2Q6N021 2002 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 G3V318 75 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 IGKV1-39P01597 117 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 IGKV1D-39P04432 117 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 EGR2P11161 476 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 RPL27AP46776 148 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 UBE2MP61081 183 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 SRPXP78539 464 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 SSBP2P81877 361 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 AKIRIN2Q53H80 203 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 TEX38Q6PEX7 206 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 ZNF695Q8IW36 515 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 LFNGQ8NES3 379 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 RNASE11Q8TAA1 199 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 GLYATL2Q8WU03 294 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 TMEM68Q96MH6 324 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 SPIN2AQ99865 258 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 SPIN2BQ9BPZ2 258 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 TBC1D24Q9ULP9 559 aa15.01□□□□□ -0.01
SQSTM1-216ENST00000626660 TRAV3A0A0B4J244 114 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 FAM240BA0A1B0GVZ2 78 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 MSGN1A6NI15 193 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 CDS2O95674 445 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 IL6RP08887 468 aaPredicted RBP15□□□□□ -0.01
SQSTM1-216ENST00000626660 FGF2P09038 288 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 CD28P10747 220 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 VAMP1P23763 118 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 DEFA1P59665 94 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 DEFA3P59666 94 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 C10orf99Q6UWK7 81 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 SLC25A42Q86VD7 318 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 RBPMSQ93062 196 aaKnown RBP15□□□□□ -0.01
SQSTM1-216ENST00000626660 RRNAD1Q96FB5 475 aaKnown RBP15□□□□□ -0.01
SQSTM1-216ENST00000626660 COMMD5Q9GZQ3 224 aa15□□□□□ -0.01
SQSTM1-216ENST00000626660 PRNDQ9UKY0 176 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms