RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 PPIAL4CA0A0B4J2A2 164 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 PMS2P5A8MQ11 134 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 H0YJW9 148 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 UPK2O00526 184 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 FCN3O75636 299 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 IFNA10P01566 189 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 PPIAL4GP0DN37 164 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 USF1P22415 310 aaPredicted RBP13.35□□□□□ -0.27
LDB3-208ENST00000623007 LGALS7P47929 136 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 HOXA1P49639 335 aaPredicted RBP13.35□□□□□ -0.27
LDB3-208ENST00000623007 WDR25Q64LD2 544 aaPredicted RBP13.35□□□□□ -0.27
LDB3-208ENST00000623007 OR8G2PQ6IF36 304 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 LY6G5BQ8NDX9 201 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 ST6GALNAC6Q969X2 333 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 OR4C12Q96R67 309 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 PATZ1Q9HBE1 687 aaKnown RBP13.35□□□□□ -0.27
LDB3-208ENST00000623007 PLA2G2EQ9NZK7 142 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 KIAA1456Q9P272 454 aa13.35□□□□□ -0.27
LDB3-208ENST00000623007 F8W036 122 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 H7C2Y5 167 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 M0R1W7 72 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 APOC3P02656 99 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 VDAC2P45880 294 aaPredicted RBP13.34□□□□□ -0.27
LDB3-208ENST00000623007 LINC00205P59089 165 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 DLK1P80370 383 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 HAPLN4Q86UW8 402 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 KPTNQ9Y664 436 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 INS-IGF2F8WCM5 200 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 KBTBD11O94819 623 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 SNAPINO95295 136 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 F12P00748 615 aaPredicted RBP13.34□□□□□ -0.27
LDB3-208ENST00000623007 SOD3P08294 240 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 TMEM41BQ5BJD5 291 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 C1orf229Q6ZS94 237 aaPredicted RBP13.34□□□□□ -0.27
LDB3-208ENST00000623007 C1orf122Q6ZSJ8 110 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 ZDHHC16Q969W1 377 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 HARBI1Q96MB7 349 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 RNF5Q99942 180 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 NABP2Q9BQ15 211 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 PLEKHA3Q9HB20 300 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 OR51B2Q9Y5P1 312 aa13.34□□□□□ -0.27
LDB3-208ENST00000623007 DSPP15924 2871 aaKnown RBP13.33□□□□□ -0.28
LDB3-208ENST00000623007 UBE2L5PA0A1B0GUS4 154 aa13.33□□□□□ -0.28
LDB3-208ENST00000623007 TAGLN2P37802 199 aaKnown RBP13.33□□□□□ -0.28
LDB3-208ENST00000623007 EFNA4P52798 201 aa13.33□□□□□ -0.28
LDB3-208ENST00000623007 PRCDQ00LT1 54 aa13.33□□□□□ -0.28
LDB3-208ENST00000623007 ARL16Q0P5N6 197 aa13.33□□□□□ -0.28
LDB3-208ENST00000623007 GUK1Q16774 197 aa13.33□□□□□ -0.28
LDB3-208ENST00000623007 VMA21Q3ZAQ7 101 aa13.33□□□□□ -0.28
LDB3-208ENST00000623007 C11orf42Q8N5U0 333 aa13.33□□□□□ -0.28
LDB3-208ENST00000623007 MRPL20Q9BYC9 149 aaKnown RBP13.33□□□□□ -0.28
LDB3-208ENST00000623007 ANKHD1Q8IWZ3 2542 aaKnown RBP13.33□□□□□ -0.28
LDB3-208ENST00000623007 IGHV2-26A0A0B4J1V2 119 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 A0A1W2PN81 502 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 A6NNC1 897 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 C15orf62A8K5M9 175 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 TSPAN9O75954 239 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 CD1BP29016 333 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 CHRNA7P36544 502 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 UQCRFS1P47985 274 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 RUNX1Q01196 453 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 HLA-DRB5Q30154 266 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 ETV3LQ6ZN32 361 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 KIR3DL3Q8N743 410 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 SLC24A4Q8NFF2 622 aa13.32□□□□□ -0.28
LDB3-208ENST00000623007 YLPM1P49750 1951 aaKnown RBP13.32□□□□□ -0.28
LDB3-208ENST00000623007 NDUFS6O75380 124 aaKnown RBP13.31□□□□□ -0.28
LDB3-208ENST00000623007 IGLV1-47P01700 117 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 GPR6P46095 362 aaPredicted RBP13.31□□□□□ -0.28
LDB3-208ENST00000623007 RAB31Q13636 194 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 PMS2P11Q13670 270 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 VKORC1L1Q8N0U8 176 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 TMEM167AQ8TBQ9 72 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 MBD3L1Q8WWY6 194 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 SSBP3Q9BWW4 388 aaPredicted RBP13.31□□□□□ -0.28
LDB3-208ENST00000623007 COMMD5Q9GZQ3 224 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 EIF5A2Q9GZV4 153 aaKnown RBP13.31□□□□□ -0.28
LDB3-208ENST00000623007 NARFLQ9H6Q4 476 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 ZZEF1O43149 2961 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 LYNX1G3V0Z9 82 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 IFNA1P01562 189 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 LYNX1P0DP58 116 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 FGF7P21781 194 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 NPY1RP25929 384 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 CEACAM3P40198 252 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 DEFA5Q01523 94 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 UTF1Q5T230 341 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 OR1L8Q8NGR8 309 aa13.31□□□□□ -0.28
LDB3-208ENST00000623007 MS4A7Q9GZW8 240 aaPredicted RBP13.31□□□□□ -0.28
LDB3-208ENST00000623007 IGKV1-16P04430 117 aa13.3□□□□□ -0.28
LDB3-208ENST00000623007 IFNA4P05014 189 aa13.3□□□□□ -0.28
LDB3-208ENST00000623007 SAA1P0DJI8 122 aaPredicted RBP13.3□□□□□ -0.28
LDB3-208ENST00000623007 MDKP21741 143 aaPredicted RBP13.3□□□□□ -0.28
LDB3-208ENST00000623007 MAS1LP35410 378 aa13.3□□□□□ -0.28
LDB3-208ENST00000623007 RPS16P62249 146 aaKnown RBP13.3□□□□□ -0.28
LDB3-208ENST00000623007 RPL8P62917 257 aaKnown RBP13.3□□□□□ -0.28
LDB3-208ENST00000623007 ERHP84090 104 aaKnown RBP13.3□□□□□ -0.28
LDB3-208ENST00000623007 AVPI1Q5T686 147 aa13.3□□□□□ -0.28
LDB3-208ENST00000623007 TEX45Q8NA69 505 aa13.3□□□□□ -0.28
LDB3-208ENST00000623007 NPVFQ9HCQ7 196 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms