RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 GABRG2P18507 467 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 NPC2P61916 151 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 RAX2Q96IS3 184 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 WNK3Q9BYP7 1800 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 A0A1W2PPV9 198 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 VSTM5A8MXK1 200 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 SLAQ13239 276 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 KLF17Q5JT82 389 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM171Q8WVE6 324 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 LRP5O75197 1615 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 MS4A5Q9H3V2 200 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 PLA2G2EQ9NZK7 142 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 TRAV8-4A0A0B4J246 113 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 AGFG2O95081 481 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 CLEC7AQ9BXN2 247 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 FAM206AQ9NX38 181 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 STRCQ7RTU9 1775 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 TRAV26-1A0A087WT03 109 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 HSPB2A8KAH6 182 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 A8MWL6 223 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 CLDN14O95500 239 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF32P17041 273 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 PEBP1P30086 187 aaKnown RBP4.29□□□□□ -1.72
VPS13D-214ENST00000620676 TJP1Q07157 1748 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 HSPB2Q16082 182 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF525Q8N782 197 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 NPCDR1Q9BY65 106 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 CKAP5Q14008 2032 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 TRAV30A0A087WSZ9 112 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 FAM157AC9JC47 383 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 HSD52Q0P140 79 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 Q6ZNB5 142 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 ACACBO00763 2458 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF766Q5HY98 468 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 KIR3DL3Q8N743 410 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 MYO16Q9Y6X6 1858 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 IGKV1D-42A0A075B6H8 117 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 WIPF3A6NGB9 483 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 RS1O15537 224 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 MOB3BQ86TA1 216 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 IGHV3OR16-8A0A075B7F1 116 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 HOXA3O43365 443 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-214ENST00000620676 C1orf174Q8IYL3 243 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 FGFRL1Q8N441 504 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 SLC25A40Q8TBP6 338 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 C5orf30Q96GV9 206 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF638Q14966 1978 aaKnown RBP4.29□□□□□ -1.72
VPS13D-214ENST00000620676 SERF2P84101 59 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM211Q6ICI0 200 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 M0R1B8 84 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 PLPPR1Q8TBJ4 325 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 MIA3Q5JRA6 1907 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 CUL9Q8IWT3 2517 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 IGKV1D-13A0A0B4J2D9 117 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 IGKV1-13P0DP09 117 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 P2RX4Q99571 388 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 DECR2Q9NUI1 292 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 Q9Y3F1 56 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 DHHO43323 396 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 S100A4P26447 101 aaKnown RBP4.28□□□□□ -1.72
VPS13D-214ENST00000620676 CD38P28907 300 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 APOBEC4Q8WW27 367 aaKnown RBP4.28□□□□□ -1.72
VPS13D-214ENST00000620676 SCN1AP35498 2009 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 H0Y980 276 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 RBFOX2O43251 390 aaKnown RBP eCLIP4.28□□□□□ -1.725e-8■□□□□ 8.9
VPS13D-214ENST00000620676 C1orf100Q5SVJ3 147 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 TEPPQ6URK8 271 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 CT55Q8WUE5 264 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 DCTN5Q9BTE1 182 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 CACNA1GO43497 2377 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 SMCHD1A6NHR9 2005 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 HIGD1CA8MV81 97 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 PRB1P04280 392 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 CELA3AP09093 270 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 LCN2P80188 198 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 LINC00470Q9BZP3 86 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 CDIPTO14735 213 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 FOLR3P41439 243 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 CACNG7P62955 275 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 SSPNQ14714 243 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 SH2D6Q7Z4S9 175 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 HAPLN4Q86UW8 402 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 ITGB1BP1O14713 200 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 PF4V1P10720 104 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 LINC00479Q96M42 142 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 OTOFQ9HC10 1997 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 RPL36A-HNRNPH2H7BZ11 118 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 TNFRSF1AP19438 455 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 LRTM2Q8N967 370 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 NDFIP1Q9BT67 221 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 FAM60AQ9NP50 221 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 C5orf63A6NC05 138 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 PGPA6NDG6 321 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 SCAND1P57086 179 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 RNFT1Q5M7Z0 435 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 AMTNQ6UX39 209 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 OR2H1Q9GZK4 316 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 SMKR1H3BMG3 65 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 SCRG1O75711 98 aa4.28□□□□□ -1.72
VPS13D-214ENST00000620676 MEOX1P50221 254 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms