RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 RBPJQ06330 500 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 C3orf36Q3SXR2 165 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 ZNF787Q6DD87 383 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 LYPD2Q6UXB3 125 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 ZNF788Q6ZQV5 615 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 ABHD12Q8N2K0 398 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 COMMD1Q8N668 190 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 LFNGQ8NES3 379 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 NUP37Q8NFH4 326 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 SLC25A22Q9H936 323 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 HEYLQ9NQ87 328 aaPredicted RBP10.22□□□□□ -0.77
CIITA-212ENST00000618207 SLC25A10Q9UBX3 287 aaPredicted RBP10.22□□□□□ -0.77
CIITA-212ENST00000618207 ASH1LQ9NR48 2969 aaKnown RBP10.22□□□□□ -0.77
CIITA-212ENST00000618207 FAM90A26D6RGX4 464 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 HPRT1P00492 218 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 IGKV1D-33P01593 117 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 IGKV1-33P01594 117 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 DLX1P56177 255 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 ERVK-16P61578 105 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 SNRPEP62304 92 aaKnown RBP10.22□□□□□ -0.77
CIITA-212ENST00000618207 REC114Q7Z4M0 266 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 SDSLQ96GA7 329 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 TMPRSS5Q9H3S3 457 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 SSUH2Q9Y2M2 353 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 MSRB2Q9Y3D2 182 aa10.22□□□□□ -0.77
CIITA-212ENST00000618207 A0A1W2PPE2 198 aa10.21□□□□□ -0.77
CIITA-212ENST00000618207 UBE2CO00762 179 aa10.21□□□□□ -0.77
CIITA-212ENST00000618207 RPL31P62899 125 aaKnown RBP10.21□□□□□ -0.77
CIITA-212ENST00000618207 FAM222BQ8WU58 562 aa10.21□□□□□ -0.77
CIITA-212ENST00000618207 RCC1LQ96I51 464 aaKnown RBP10.21□□□□□ -0.77
CIITA-212ENST00000618207 RHOVQ96L33 236 aa10.21□□□□□ -0.77
CIITA-212ENST00000618207 TMEM140Q9NV12 185 aa10.21□□□□□ -0.77
CIITA-212ENST00000618207 KIAA1456Q9P272 454 aa10.21□□□□□ -0.77
CIITA-212ENST00000618207 ZNF835Q9Y2P0 537 aa10.21□□□□□ -0.77
CIITA-212ENST00000618207 E7EQL1 145 aa10.21□□□□□ -0.78
CIITA-212ENST00000618207 CGB3P0DN86 165 aa10.21□□□□□ -0.78
CIITA-212ENST00000618207 CGB7P0DN87 165 aa10.21□□□□□ -0.78
CIITA-212ENST00000618207 ACSM6Q6P461 480 aa10.21□□□□□ -0.78
CIITA-212ENST00000618207 TGIF2LXQ8IUE1 241 aa10.21□□□□□ -0.78
CIITA-212ENST00000618207 LAMP3Q9UQV4 416 aa10.21□□□□□ -0.78
CIITA-212ENST00000618207 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.2□□□□□ -0.78
CIITA-212ENST00000618207 CIDEAO60543 219 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 SCAF4O95104 1147 aaKnown RBP10.2□□□□□ -0.78
CIITA-212ENST00000618207 TMPRSS3P57727 454 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 RAB11AP62491 216 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 ICAM4Q14773 271 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 RRHO14718 337 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 FCN3O75636 299 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 CRYBA1P05813 215 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 NQO2P16083 231 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 PAX5Q02548 391 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 AVPI1Q5T686 147 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 RPP25LQ8N5L8 163 aaKnown RBP10.2□□□□□ -0.78
CIITA-212ENST00000618207 ZNF383Q8NA42 475 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 CLDND2Q8NHS1 167 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 RNASE6Q93091 150 aaKnown RBP10.2□□□□□ -0.78
CIITA-212ENST00000618207 IDI2-AS1Q9NZ38 188 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 NAV3Q8IVL0 2385 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 PPIAL4EA0A075B759 164 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 ZNF727A8MUV8 499 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 PPIAL4DF5H284 164 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 CCL21O00585 134 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 IGKV1-16P04430 117 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 PPIAL4FP0DN26 164 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 COL8A2P25067 703 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 CDSNQ15517 529 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 CR1LQ2VPA4 569 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 EGLN1Q9GZT9 426 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 UNKLQ9H9P5 680 aaKnown RBP10.2□□□□□ -0.78
CIITA-212ENST00000618207 SLC39A9Q9NUM3 307 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 JKAMPQ9P055 326 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 PPIAL4AQ9Y536 164 aa10.2□□□□□ -0.78
CIITA-212ENST00000618207 TRAV38-1A0A0B4J264 116 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 A0A1W2PPH5 198 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 MAP1LC3B2A6NCE7 125 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 C5orf52A6NGY3 159 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 NKX6-3A6NJ46 265 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 C15orf62A8K5M9 175 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 PMS2P5A8MQ11 134 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 SHISA9B4DS77 424 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 SRP19P09132 144 aaKnown RBP10.19□□□□□ -0.78
CIITA-212ENST00000618207 GCSAMLQ5JQS6 135 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 FFAR4Q5NUL3 377 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 FAM24BQ8N5W8 94 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 LHX4Q969G2 390 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 MAP1LC3BQ9GZQ8 125 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 TMEM106BQ9NUM4 274 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 CSMD1Q96PZ7 3565 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 SVEP1Q4LDE5 3571 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 TMEM147Q9BVK8 224 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 SMCO4Q9NRQ5 59 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 URGCP-MRPS24S4R325 110 aa10.19□□□□□ -0.78
CIITA-212ENST00000618207 PIEZO1Q92508 2521 aa10.18□□□□□ -0.78
CIITA-212ENST00000618207 hADV38S2A0JD32 116 aa10.18□□□□□ -0.78
CIITA-212ENST00000618207 H3BQ15 152 aa10.18□□□□□ -0.78
CIITA-212ENST00000618207 TMEM178BH3BS89 294 aa10.18□□□□□ -0.78
CIITA-212ENST00000618207 HBE1P02100 147 aa10.18□□□□□ -0.78
CIITA-212ENST00000618207 RAB7AP51149 207 aa10.18□□□□□ -0.78
CIITA-212ENST00000618207 RELBQ01201 579 aa10.18□□□□□ -0.78
CIITA-212ENST00000618207 OR4A47Q6IF82 309 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms